Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Hahella.
Genome size (bp): 7215267
Number of genes 6778
Oriloc predictions: Origin 0 kb Terminus 3439 kb
Worning et al., 2006: Origin 7213 kb Terminus 3403 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2255.356 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1.08 kb, 1941.58 kb
Consensus predictions: Origin 0 kb Terminus 3439 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1453 | 0.01667 | 2821 |
| 1761 | 0 | 3441 | |
| GC-skew reverse | 4632 | 0 | 3360 |
| AT-skew forward | 1621 | 0 | 3174 |
| AT-skew reverse | 4676 | 0 | 3445 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1453 (2821.2505 kb) | leading | 0.092 |
| 1454 (2822.3295 kb) | 1761 (3440.6735 kb) | leading | 0.034 | |
| 1762 (3442.307 kb) | 3253 (7214.957 kb) | lagging | -0.123 | |
| GC-skew reverse | 3254 (0 kb) | 4632 (3360.063 kb) | leading | 0.118 |
| 4633 (3360.687 kb) | 6778 (7214.957 kb) | lagging | -0.085 | |
| AT-skew forward | 1 (0 kb) | 1621 (3173.665 kb) | leading | -0.202 |
| 1622 (3174.0565 kb) | 3253 (7214.957 kb) | lagging | -0.056 | |
| AT-skew reverse | 3254 (0 kb) | 4676 (3445.262 kb) | leading | 0.051 |
| 4677 (3451.485 kb) | 6778 (7214.957 kb) | lagging | 0.182 |
More G than C on the leading strand for replication.