Rearranged Oriloc output example: Previous Index Next
Bacteria; Firmicutes; Bacillales; Staphylococcus.
Genome size (bp): 2516575
Number of genes 2445
Oriloc predictions: Origin 33 kb Terminus 1279 kb
Worning et al., 2006: Origin 0 kb Terminus 1389 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 0.419 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1.19 kb, 1127.1 kb, 1336.22 kb, 1705.65 kb
Consensus predictions: Origin 33 kb Terminus 1279 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 902 | NA | 1277 |
| GC-skew reverse | 1625 | NA | 1296 |
| 1929 | NA | 1786 | |
| AT-skew forward | 403 | NA | 646 |
| 973 | NA | 1361 | |
| AT-skew reverse | 1653 | NA | 1416 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 902 (1277.121 kb) | leading | 0.114 |
| 903 (1279.071 kb) | 1289 (2516.352 kb) | lagging | -0.149 | |
| GC-skew reverse | 1290 (0 kb) | 1625 (1295.5225 kb) | leading | 0.173 |
| 1626 (1297.8165 kb) | 1929 (1786.0625 kb) | lagging | -0.097 | |
| 1930 (1787.325 kb) | 2445 (2516.352 kb) | lagging | -0.123 | |
| AT-skew forward | 1 (0 kb) | 403 (646.2845 kb) | leading | -0.001 |
| 404 (649.166 kb) | 973 (1360.9575 kb) | leading | 0.016 | |
| 974 (1362.5215 kb) | 1289 (2516.352 kb) | lagging | -0.038 | |
| AT-skew reverse | 1290 (0 kb) | 1653 (1416.098 kb) | leading | 0.042 |
| 1654 (1417.2505 kb) | 2445 (2516.352 kb) | lagging | -0.007 |
More G than C on the leading strand for replication.