Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.
Genome size (bp): 4369232
Number of genes 4274
Oriloc predictions: Origin NA Terminus NA
Worning et al., 2006: Origin 3735 kb Terminus 1487 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 3740.648 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 3918.91 kb
Consensus predictions: Origin 4335 kb Terminus 1485 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 771 | NA | 1503 |
| 1344 | NA | 2853 | |
| GC-skew reverse | 2759 | NA | 1464 |
| AT-skew forward | 886 | NA | 1728 |
| AT-skew reverse | 3100 | NA | 2095 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 771 (1502.7595 kb) | leading | 0.05 |
| 772 (1509.2265 kb) | 1344 (2852.615 kb) | lagging | 0.008 | |
| 1345 (2853.5975 kb) | 2018 (4369.205 kb) | lagging | 0.034 | |
| GC-skew reverse | 2019 (0 kb) | 2759 (1463.928 kb) | leading | -0.014 |
| 2760 (1466.938 kb) | 4274 (4369.205 kb) | lagging | -0.041 | |
| AT-skew forward | 1 (0 kb) | 886 (1727.6915 kb) | leading | -0.145 |
| 887 (1732.2625 kb) | 2018 (4369.205 kb) | lagging | -0.152 | |
| AT-skew reverse | 2019 (0 kb) | 3100 (2095.289 kb) | NA | 0.135 |
| 3101 (2097.009 kb) | 4274 (4369.205 kb) | lagging | 0.172 |
More G than C on the leading strand for replication.