Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Neorickettsia.
Genome size (bp): 859006
Number of genes 931
Oriloc predictions: Origin 0 kb Terminus 421 kb
Worning et al., 2006: Origin 855 kb Terminus 432 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 275.287 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 221.03 kb
Consensus predictions: Origin 0 kb Terminus 421 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 289 | 0 | 417 |
| GC-skew reverse | 675 | 0 | 437 |
| AT-skew forward | 293 | 0 | 431 |
| AT-skew reverse | 666 | 0 | 422 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 289 (417.3645 kb) | leading | 0.246 |
| 290 (424.286 kb) | 475 (858.852 kb) | lagging | -0.025 | |
| GC-skew reverse | 476 (0 kb) | 675 (437.4175 kb) | leading | 0.01 |
| 676 (438.9625 kb) | 931 (858.852 kb) | lagging | -0.217 | |
| AT-skew forward | 1 (0 kb) | 293 (431.2745 kb) | leading | -0.241 |
| 294 (436.523 kb) | 475 (858.852 kb) | lagging | 0.027 | |
| AT-skew reverse | 476 (0 kb) | 666 (421.7245 kb) | leading | -0.024 |
| 667 (423.2775 kb) | 931 (858.852 kb) | lagging | 0.231 |
More G than C on the leading strand for replication.