Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.
Genome size (bp): 4406967
Number of genes 3804
Oriloc predictions: Origin 130 kb Terminus 2244 kb
Worning et al., 2006: Origin 125 kb Terminus 2233 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 3026.606 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.82 kb
Consensus predictions: Origin 130 kb Terminus 2244 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1059 | 0.00667 | 2237 |
| 1688 | 0.00667 | 3967 | |
| GC-skew reverse | 2720 | 0.00667 | 2198 |
| 3636 | 0.04333 | 3995 | |
| AT-skew forward | 201 | 0.04667 | 459 |
| 954 | 0.02 | 2018 | |
| AT-skew reverse | 2044 | 0.03556 | 369 |
| 2736 | 0.00222 | 2246 | |
| 3716 | 0.00222 | 4148 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1059 (2236.674 kb) | leading | -0.034 |
| 1060 (2242.7925 kb) | 1688 (3966.516 kb) | lagging | -0.107 | |
| 1689 (3969.062 kb) | 1883 (4406.937 kb) | lagging | -0.039 | |
| GC-skew reverse | 1884 (0 kb) | 2720 (2198.5 kb) | leading | 0.104 |
| 2721 (2200.975 kb) | 3636 (3994.598 kb) | lagging | 0.027 | |
| 3637 (3995.303 kb) | 3804 (4406.937 kb) | lagging | 0.068 | |
| AT-skew forward | 1 (0 kb) | 201 (458.9955 kb) | NA | -0.188 |
| 202 (461.373 kb) | 954 (2017.557 kb) | leading | -0.253 | |
| 955 (2018.75 kb) | 1883 (4406.937 kb) | lagging | -0.143 | |
| AT-skew reverse | 1884 (0 kb) | 2044 (368.7625 kb) | NA | 0.202 |
| 2045 (369.912 kb) | 2736 (2245.9315 kb) | leading | 0.12 | |
| 2737 (2246.3055 kb) | 3716 (4148.3035 kb) | lagging | 0.26 | |
| 3717 (4152.2245 kb) | 3804 (4406.937 kb) | lagging | 0.126 |
More G than C on the leading strand for replication.