Franck Picard - Software

Functional Poisson Regression

.zip contains the R functions to implement the Lasso and group-Lasso procedures for functional Poisson Regression

curvclust

curvclust is a R package dedicated to curve clustering with functional random effects. The package corresponds to the IAP techreport on curve clustering . Code for simulations as well as data analyzed in the techreport are available here.

CGHseg

CGHSeg performs segmentation in Gaussian processes with application to array CGH data analysis. The first version of these programs has been implemented in MATLAB and can be downloaded here. These programs correspond to the BMC Bioinformatics paper . Another version is available with the segclust R package to perform segmentation and segmentation/clustering as presented in the Biometrics paper . The cghseg package is now available on the CRAN. It performs joint segmentation as presented in the Biostatistics paper .

MixNet

MixNet is a software package that runs on LINUX. The webpage of the project is here, along with network datasets and commented examples. The code has been implemented by Vincent Miele, and corresponds to the Stat&Comp paper. from the statistical point of view, and a full presentation of MixNet results can be found in the BMC Bioinformatics paper to appear.

Microarray normalization

An R package [.zip] [.tar.gz] has been developed by Marie-Laure Martin-Magniette (AgroParisTech) and Julie Aubert (AgroParisTech) to identify the set of hybridized probes in microarray experiments. It corresponds to this preprint .