Rearranged Oriloc output example: Previous Index Next




Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanothermobacter.
Genome size (bp): 1751377
Number of genes 1870
Oriloc predictions: Origin NA Terminus NA
Worning et al., 2006: Origin 1292 kb Terminus 404 kb
Position(s) of the ORC/Cdc6 gene(s): NA
Consensus predictions: Origin 1284 kb Terminus 566 kb
Significant breakpoints (p-value <0.05):
Breakpoints P-value Chromosome coordinate (kb)
GC-skew forward7630.006671428
GC-skew reverse16390.033331293
AT-skew reverse14360.02996
15910.013331207
Segments:
From (index/coord) To (index/coord) StrandSlope
GC-skew forward 1 (0 kb)763 (1428.025 kb) NA-0.06
764 (1428.4165 kb)938 (1751.364 kb) leading0.002
GC-skew reverse 939 (0 kb)1639 (1292.5295 kb) NA0.032
1640 (1294.461 kb)1870 (1751.364 kb) leading0.061
AT-skew reverse 939 (0 kb)1436 (995.5585 kb) NA-0.045
1437 (996.241 kb)1591 (1206.6835 kb) lagging-0.135
1592 (1207.262 kb)1870 (1751.364 kb) leading-0.029