Rearranged Oriloc output example: Previous Index Next
Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydophila.
Genome size (bp): 1229853
Number of genes 1112
Oriloc predictions: Origin 0 kb Terminus 624 kb
Worning et al., 2006: Origin 0 kb Terminus 626 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 493.236 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 370.93 kb, 491 kb
Consensus predictions: Origin 0 kb Terminus 624 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 314 | NA | 626 |
| GC-skew reverse | 821 | NA | 622 |
| 973 | NA | 930 | |
| 1057 | NA | 1089 | |
| AT-skew forward | 307 | NA | 621 |
| AT-skew reverse | 819 | NA | 617 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 314 (625.9915 kb) | leading | 0.11 |
| 315 (628.214 kb) | 553 (1229.83 kb) | lagging | -0.14 | |
| GC-skew reverse | 554 (0 kb) | 821 (622.2255 kb) | leading | 0.185 |
| 822 (625.581 kb) | 973 (930.082 kb) | lagging | -0.152 | |
| 974 (930.7055 kb) | 1057 (1089.136 kb) | lagging | -0.008 | |
| 1058 (1094.9365 kb) | 1112 (1229.83 kb) | lagging | -0.115 | |
| AT-skew forward | 1 (0 kb) | 307 (620.594 kb) | leading | -0.138 |
| 308 (622.0345 kb) | 553 (1229.83 kb) | lagging | -0.075 | |
| AT-skew reverse | 554 (0 kb) | 819 (617.317 kb) | leading | 0.075 |
| 820 (617.8865 kb) | 1112 (1229.83 kb) | lagging | 0.128 |
More G than C on the leading strand for replication.