Rearranged Oriloc output example: Previous Index Next
Bacteria; Chloroflexi; Dehalococcoidetes; Dehalococcoides.
Genome size (bp): 1469720
Number of genes 1579
Oriloc predictions: Origin 0 kb Terminus 791 kb
Worning et al., 2006: Origin 2 kb Terminus 793 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 444.38 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.93 kb
Consensus predictions: Origin 0 kb Terminus 791 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 421 | NA | 790 |
| 544 | NA | 1073 | |
| GC-skew reverse | 1171 | NA | 756 |
| 1288 | NA | 972 | |
| 1328 | NA | 1029 | |
| AT-skew forward | 412 | NA | 780 |
| 670 | NA | 1272 | |
| AT-skew reverse | 949 | NA | 343 |
| 1187 | NA | 800 | |
| 1313 | NA | 996 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 421 (789.877 kb) | leading | 0.056 |
| 422 (790.724 kb) | 544 (1073.356 kb) | lagging | -0.066 | |
| 545 (1074.7215 kb) | 776 (1469.688 kb) | lagging | -0.103 | |
| GC-skew reverse | 777 (0 kb) | 1171 (756.3965 kb) | leading | 0.124 |
| 1172 (756.8935 kb) | 1288 (971.9205 kb) | lagging | -0.045 | |
| 1289 (973.057 kb) | 1328 (1029.359 kb) | lagging | 0.129 | |
| 1329 (1029.932 kb) | 1579 (1469.688 kb) | lagging | -0.047 | |
| AT-skew forward | 1 (0 kb) | 412 (779.7365 kb) | leading | -0.212 |
| 413 (780.6305 kb) | 670 (1272.0355 kb) | lagging | -0.052 | |
| 671 (1276.4295 kb) | 776 (1469.688 kb) | lagging | 0.019 | |
| AT-skew reverse | 777 (0 kb) | 949 (342.647 kb) | leading | 0.066 |
| 950 (347.5925 kb) | 1187 (800.479 kb) | leading | 0.015 | |
| 1188 (802.931 kb) | 1313 (996.0545 kb) | lagging | 0.19 | |
| 1314 (997.093 kb) | 1579 (1469.688 kb) | lagging | 0.204 |
More G than C on the leading strand for replication.