Rearranged Oriloc output example: Previous Index Next
Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.
Genome size (bp): 2467205
Number of genes 2335
Oriloc predictions: Origin 2 kb Terminus 1257 kb
Worning et al., 2006: Origin 6 kb Terminus 1153 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2391.621 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.93 kb
Consensus predictions: Origin 0 kb Terminus 1257 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 729 | 0.02 | 1516 |
| AT-skew forward | 578 | 0 | 1177 |
| AT-skew reverse | 1711 | 0 | 1175 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 729 (1515.771 kb) | leading | -0.025 |
| 730 (1517.149 kb) | 1190 (2467.021 kb) | lagging | -0.06 | |
| AT-skew forward | 1 (0 kb) | 578 (1176.723 kb) | leading | -0.322 |
| 579 (1177.654 kb) | 1190 (2467.021 kb) | lagging | -0.11 | |
| AT-skew reverse | 1191 (0 kb) | 1711 (1175.052 kb) | leading | 0.109 |
| 1712 (1180.8095 kb) | 2335 (2467.021 kb) | lagging | 0.305 |
More G than C on the leading strand for replication - for forward encoded genes.