Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.
Genome size (bp): 2153922
Number of genes 2002
Oriloc predictions: Origin 11 kb Terminus 774 kb
Worning et al., 2006: Origin 1893 kb Terminus 761 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1233.358 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.94 kb
Consensus predictions: Origin 11 kb Terminus 774 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 365 | 0.00667 | 775 |
| GC-skew reverse | 1288 | 0 | 756 |
| 1903 | 0 | 1917 | |
| AT-skew forward | 332 | 0 | 717 |
| AT-skew reverse | 1294 | 0.02667 | 774 |
| 1705 | 0.01833 | 1572 | |
| 1744 | 0.005 | 1618 | |
| 1878 | 0.00667 | 1848 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 365 (774.99 kb) | leading | -0.051 |
| 366 (776.9635 kb) | 939 (2153.788 kb) | lagging | -0.204 | |
| GC-skew reverse | 940 (0 kb) | 1288 (755.864 kb) | leading | 0.294 |
| 1289 (757.2465 kb) | 1903 (1916.5765 kb) | lagging | 0.052 | |
| 1904 (1918.323 kb) | 2002 (2153.788 kb) | lagging | 0.296 | |
| AT-skew forward | 1 (0 kb) | 332 (716.7335 kb) | leading | -0.071 |
| 333 (717.495 kb) | 939 (2153.788 kb) | lagging | 0.053 | |
| AT-skew reverse | 940 (0 kb) | 1294 (773.5205 kb) | leading | -0.122 |
| 1295 (776.304 kb) | 1705 (1572.0675 kb) | lagging | 0.061 | |
| 1706 (1574.3325 kb) | 1744 (1618.0545 kb) | lagging | -0.137 | |
| 1745 (1619.8135 kb) | 1878 (1848.332 kb) | lagging | 0.145 | |
| 1879 (1852.491 kb) | 2002 (2153.788 kb) | lagging | -0.107 |
More G than C on the leading strand for replication.