Rearranged Oriloc output example: Previous Index Next




Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.
Genome size (bp): 2595221
Number of genes 2661
Oriloc predictions: Origin 339 kb Terminus 1320 kb
Worning et al., 2006: Origin 1334 kb Terminus 301 kb
Position(s) of the ORC/Cdc6 gene(s): 304.09 kb, 1488.11 kb, 1567.16 kb, 299.36 kb, 304.09 kb, 1488.11 kb, 1567.16 kb
Consensus predictions: Origin 339 kb Terminus 1320 kb
Significant breakpoints (p-value <0.05):
Breakpoints P-value Chromosome coordinate (kb)
GC-skew forward1680.06333348
7880.053331465
1680.06333348
7880.053331465
GC-skew reverse15580.05333333
21390.116671533
15580.05333333
21390.116671533
AT-skew forward1460.00333307
7190.023331322
AT-skew reverse15720.01333354
20390.026671343
Segments:
From (index/coord) To (index/coord) StrandSlope
GC-skew forward 1 (0 kb)168 (347.948 kb) lagging-0.168
169 (350.9265 kb)168 (347.948 kb) leading0.21
169 (350.9265 kb)788 (1465.195 kb) leading-0.215
789 (1465.921 kb)788 (1465.195 kb) lagging0.1
789 (1465.921 kb)1394 (2595.209 kb) lagging-0.161
GC-skew reverse 1395 (0 kb)1558 (332.7265 kb) lagging0.207
1559 (334.33 kb)1558 (332.7265 kb) lagging-0.079
1559 (334.33 kb)2139 (1533.052 kb) NA0.159
2140 (1534.0115 kb)2139 (1533.052 kb) lagging-0.617
2140 (1534.0115 kb)2661 (2595.209 kb) lagging0.199
AT-skew forward 1 (0 kb)146 (306.632 kb) lagging0.093
147 (308.245 kb)719 (1322.08 kb) leading-0.106
720 (1322.8535 kb)1394 (2595.209 kb) lagging0.016
AT-skew reverse 1395 (0 kb)1572 (354.3655 kb) lagging0.09
1573 (355.4835 kb)2039 (1342.621 kb) leading-0.078
2040 (1343.576 kb)2661 (2595.209 kb) lagging0.064
More T than A on the leading strand for replication.
More C than G on the leading strand for replication - for forward encoded genes.