Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
Genome size (bp): 6438405
Number of genes 5736
Oriloc predictions: Origin 0 kb Terminus 3057 kb
Worning et al., 2006: Origin 6433 kb Terminus 3157 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 6309.819 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1.33 kb
Consensus predictions: Origin 0 kb Terminus 3057 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1502 | NA | 3231 |
| 1819 | NA | 3831 | |
| 2318 | NA | 4956 | |
| GC-skew reverse | 3989 | NA | 2739 |
| AT-skew forward | 1083 | NA | 2203 |
| 1463 | NA | 3108 | |
| 2016 | NA | 4184 | |
| AT-skew reverse | 4153 | NA | 3051 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1502 (3231.3365 kb) | leading | -0.03 |
| 1503 (3233.397 kb) | 1819 (3831.3605 kb) | lagging | -0.097 | |
| 1820 (3834.2885 kb) | 2318 (4955.7745 kb) | lagging | -0.112 | |
| 2319 (4957.148 kb) | 2931 (6438.25 kb) | lagging | -0.128 | |
| GC-skew reverse | 2932 (0 kb) | 3989 (2738.6165 kb) | leading | 0.123 |
| 3990 (2742.267 kb) | 5736 (6438.25 kb) | lagging | 0.027 | |
| AT-skew forward | 1 (0 kb) | 1083 (2203.203 kb) | leading | -0.205 |
| 1084 (2203.6295 kb) | 1463 (3107.506 kb) | leading | -0.168 | |
| 1464 (3109.982 kb) | 2016 (4184.0925 kb) | lagging | -0.099 | |
| 2017 (4189.9285 kb) | 2931 (6438.25 kb) | lagging | -0.075 | |
| AT-skew reverse | 2932 (0 kb) | 4153 (3050.6685 kb) | leading | 0.074 |
| 4154 (3057.05 kb) | 5736 (6438.25 kb) | lagging | 0.217 |
More G than C on the leading strand for replication.