Rearranged Oriloc output example: Previous Index Next
Bacteria; Firmicutes; Bacillales; Staphylococcus.
Genome size (bp): 2809422
Number of genes 2613
Oriloc predictions: Origin 0 kb Terminus 1420 kb
Worning et al., 2006: Origin 0 kb Terminus 1426 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2096.123 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1.22 kb, 1619.4 kb, 1763.69 kb
Consensus predictions: Origin 0 kb Terminus 1420 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1037 | 0 | 1443 |
| GC-skew reverse | 1661 | 0 | 1450 |
| 2254 | 0 | 2293 | |
| 2284 | 0 | 2310 | |
| AT-skew forward | 186 | 0.00889 | 324 |
| 263 | 0.00889 | 382 | |
| 973 | 0.04667 | 1353 | |
| AT-skew reverse | 1596 | 0.02 | 1096 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1037 (1442.8585 kb) | leading | 0.149 |
| 1038 (1443.745 kb) | 1327 (2809.235 kb) | lagging | -0.145 | |
| GC-skew reverse | 1328 (0 kb) | 1661 (1450.031 kb) | leading | 0.145 |
| 1662 (1451.6705 kb) | 2254 (2293.083 kb) | lagging | -0.157 | |
| 2255 (2294.237 kb) | 2284 (2310.2165 kb) | lagging | 0.326 | |
| 2285 (2312.123 kb) | 2613 (2809.235 kb) | lagging | -0.194 | |
| AT-skew forward | 1 (0 kb) | 186 (323.9315 kb) | leading | -0.024 |
| 187 (324.792 kb) | 263 (381.8285 kb) | leading | 0.084 | |
| 264 (382.2285 kb) | 973 (1352.546 kb) | leading | 0.004 | |
| 974 (1353.134 kb) | 1327 (2809.235 kb) | NA | -0.044 | |
| AT-skew reverse | 1328 (0 kb) | 1596 (1095.522 kb) | leading | 0.034 |
| 1597 (1096.2165 kb) | 2613 (2809.235 kb) | lagging | 0.005 |
More G than C on the leading strand for replication.