Rearranged Oriloc output example: Previous Index Next
Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus.
Genome size (bp): 2160837
Number of genes 2094
Oriloc predictions: Origin 0 kb Terminus 1080 kb
Worning et al., 2006: Origin 2159 kb Terminus 1095 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2061.437 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.88 kb
Consensus predictions: Origin 0 kb Terminus 1080 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 866 | NA | 1090 |
| GC-skew reverse | 1284 | NA | 1098 |
| 1432 | NA | 1273 | |
| 1746 | NA | 1660 | |
| AT-skew forward | 140 | NA | 181 |
| 170 | NA | 200 | |
| 724 | NA | 915 | |
| AT-skew reverse | 1254 | NA | 954 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 866 (1090.114 kb) | leading | 0.081 |
| 867 (1091.182 kb) | 1077 (2160.818 kb) | lagging | -0.207 | |
| GC-skew reverse | 1078 (0 kb) | 1284 (1097.6915 kb) | leading | 0.248 |
| 1285 (1099.171 kb) | 1432 (1273.363 kb) | lagging | -0.065 | |
| 1433 (1273.713 kb) | 1746 (1660.062 kb) | lagging | -0.044 | |
| 1747 (1661.04 kb) | 2094 (2160.818 kb) | lagging | -0.09 | |
| AT-skew forward | 1 (0 kb) | 140 (181.3675 kb) | leading | -0.16 |
| 141 (181.969 kb) | 170 (199.6625 kb) | leading | -0.029 | |
| 171 (200.083 kb) | 724 (915.332 kb) | leading | -0.141 | |
| 725 (915.726 kb) | 1077 (2160.818 kb) | NA | -0.112 | |
| AT-skew reverse | 1078 (0 kb) | 1254 (953.915 kb) | leading | 0.109 |
| 1255 (955.4285 kb) | 2094 (2160.818 kb) | lagging | 0.14 |
More G than C on the leading strand for replication.