Rearranged Oriloc output example: Previous Index Next
Bacteria; Firmicutes; Lactobacillales; Symbiobacterium.
Genome size (bp): 3566135
Number of genes 3337
Oriloc predictions: Origin 0 kb Terminus 1873 kb
Worning et al., 2006: Origin 3566 kb Terminus 1875 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1.483 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.69 kb, 3480.95 kb
Consensus predictions: Origin 0 kb Terminus 1873 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1207 | 0 | 1831 |
| GC-skew reverse | 2143 | 0 | 1877 |
| AT-skew forward | 1212 | 0 | 1842 |
| AT-skew reverse | 2133 | 0.02 | 1839 |
| 3086 | 0 | 3249 | |
| 3137 | 0 | 3290 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1207 (1830.6575 kb) | leading | 0.016 |
| 1208 (1832.13 kb) | 1652 (3565.7 kb) | lagging | -0.053 | |
| GC-skew reverse | 1653 (0 kb) | 2143 (1876.673 kb) | leading | 0.048 |
| 2144 (1877.5345 kb) | 3337 (3565.7 kb) | lagging | -0.026 | |
| AT-skew forward | 1 (0 kb) | 1212 (1842.058 kb) | leading | -0.238 |
| 1213 (1843.338 kb) | 1652 (3565.7 kb) | lagging | -0.071 | |
| AT-skew reverse | 1653 (0 kb) | 2133 (1839.3385 kb) | leading | 0.075 |
| 2134 (1840.835 kb) | 3086 (3248.921 kb) | lagging | 0.234 | |
| 3087 (3250.864 kb) | 3137 (3290.228 kb) | lagging | 0.506 | |
| 3138 (3291.069 kb) | 3337 (3565.7 kb) | lagging | 0.261 |
More G than C on the leading strand for replication.