Methanosarcina barkeri fusaro

Rearranged Oriloc output example: Previous Index Next

Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.
Genome size (bp): 4837408
Number of genes 3606
Oriloc predictions: Origin NA Terminus NA
Worning et al., 2006: Origin 1193 kb Terminus 4243 kb
Position(s) of the ORC/Cdc6 gene(s): 1100.3 kb, 1482.73 kb, 1963.22 kb, 2947.07 kb
Consensus predictions: Origin 1193 kb Terminus 0 kb
Significant breakpoints (p-value <0.05):

Breakpoints P-value Chromosome coordinate (kb)

AT-skew forward 584 NA 1583

1024 NA 2730

AT-skew reverse 2416 NA 1471

Segments:

From (index/coord) To (index/coord) Strand Slope

AT-skew forward 1 (0 kb) 584 (1582.761 kb) NA 0.006

585 (1583.8545 kb) 1024 (2730.259 kb) leading -0.053

1025 (2734.616 kb) 1795 (4837.3 kb) leading -0.023

AT-skew reverse 1796 (0 kb) 2416 (1471.203 kb) lagging 0.056

2417 (1474.346 kb) 3606 (4837.3 kb) leading 0.03

More T than A on the leading strand for replication - for reverse encoded genes.

	Breakpoints	P-value	Chromosome coordinate (kb)
AT-skew forward	584	NA	1583
AT-skew forward	1024	NA	2730
AT-skew reverse	2416	NA	1471

	From (index/coord)	To (index/coord)	Strand	Slope
AT-skew forward	1 (0 kb)	584 (1582.761 kb)	NA	0.006
	585 (1583.8545 kb)	1024 (2730.259 kb)	leading	-0.053
	1025 (2734.616 kb)	1795 (4837.3 kb)	leading	-0.023
AT-skew reverse	1796 (0 kb)	2416 (1471.203 kb)	lagging	0.056
AT-skew reverse	2417 (1474.346 kb)	3606 (4837.3 kb)	leading	0.03