Rearranged Oriloc output example: Previous Index Next
Bacteria; Firmicutes; Clostridia; Thermoanaerobacteriales; Thermoanaerobacteriaceae; Thermoanaerobacter.
Genome size (bp): 2689445
Number of genes 2588
Oriloc predictions: Origin 0 kb Terminus 1345 kb
Worning et al., 2006: Origin 0 kb Terminus 1346 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 519.651 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1.03 kb
Consensus predictions: Origin 0 kb Terminus 1345 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1082 | 0 | 1341 |
| GC-skew reverse | 1446 | 0 | 1363 |
| 1975 | 0.00667 | 1960 | |
| 2064 | 0.00667 | 2037 | |
| AT-skew forward | 1071 | 0 | 1330 |
| AT-skew reverse | 1480 | 0 | 1394 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1082 (1340.943 kb) | leading | 0.259 |
| 1083 (1342.719 kb) | 1252 (2689.325 kb) | lagging | -0.075 | |
| GC-skew reverse | 1253 (0 kb) | 1446 (1362.7245 kb) | leading | 0.072 |
| 1447 (1363.977 kb) | 1975 (1959.6505 kb) | lagging | -0.259 | |
| 1976 (1960.7975 kb) | 2064 (2037.0795 kb) | lagging | -0.09 | |
| 2065 (2038.3285 kb) | 2588 (2689.325 kb) | lagging | -0.257 | |
| AT-skew forward | 1 (0 kb) | 1071 (1330.136 kb) | leading | 0.043 |
| 1072 (1331.3915 kb) | 1252 (2689.325 kb) | lagging | 0.12 | |
| AT-skew reverse | 1253 (0 kb) | 1480 (1393.87 kb) | NA | -0.164 |
| 1481 (1394.8155 kb) | 2588 (2689.325 kb) | lagging | -0.047 |
More G than C on the leading strand for replication.