Rearranged Oriloc output example: Previous Index Next




Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter.
Genome size (bp): 1777831
Number of genes 1838
Oriloc predictions: Origin 0 kb Terminus 893 kb
Worning et al., 2006: Origin 7 kb Terminus 853 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1346.536 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.66 kb
Consensus predictions: Origin 0 kb Terminus 893 kb
Significant breakpoints (p-value <0.05):
Breakpoints P-value Chromosome coordinate (kb)
GC-skew forward537NA896
GC-skew reverse1276NA896
AT-skew forward544NA926
AT-skew reverse1277NA897
Segments:
From (index/coord) To (index/coord) StrandSlope
GC-skew forward 1 (0 kb)537 (896.1895 kb) leading0.22
538 (908.256 kb)883 (1777.736 kb) lagging-0.191
GC-skew reverse 884 (0 kb)1276 (896.328 kb) leading0.124
1277 (897.054 kb)1838 (1777.736 kb) lagging-0.224
AT-skew forward 1 (0 kb)544 (926.03 kb) leading-0.106
545 (928.251 kb)883 (1777.736 kb) lagging-0.053
AT-skew reverse 884 (0 kb)1277 (897.054 kb) leading0.051
1278 (899.8135 kb)1838 (1777.736 kb) lagging0.107
More T than A on the leading strand for replication.
More G than C on the leading strand for replication.