Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
Genome size (bp): 7074893
Number of genes 6136
Oriloc predictions: Origin 0 kb Terminus 3482 kb
Worning et al., 2006: Origin 7047 kb Terminus 3474 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 6983.667 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.87 kb
Consensus predictions: Origin 0 kb Terminus 3482 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 826 | NA | 1764 |
| 1328 | NA | 2660 | |
| 1652 | NA | 3505 | |
| GC-skew reverse | 4562 | NA | 3585 |
| AT-skew forward | 842 | NA | 1796 |
| 1198 | NA | 2374 | |
| 1647 | NA | 3496 | |
| AT-skew reverse | 4551 | NA | 3536 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 826 (1763.6005 kb) | leading | -0.05 |
| 827 (1765.654 kb) | 1328 (2660.149 kb) | leading | -0.024 | |
| 1329 (2663.43 kb) | 1652 (3504.531 kb) | leading | -0.05 | |
| 1653 (3506.142 kb) | 3198 (7074.427 kb) | lagging | -0.161 | |
| GC-skew reverse | 3199 (0 kb) | 4562 (3585.164 kb) | leading | 0.16 |
| 4563 (3590.266 kb) | 6136 (7074.427 kb) | lagging | 0.037 | |
| AT-skew forward | 1 (0 kb) | 842 (1795.676 kb) | leading | -0.252 |
| 843 (1796.7525 kb) | 1198 (2374.3115 kb) | leading | -0.301 | |
| 1199 (2387.602 kb) | 1647 (3496.3 kb) | leading | -0.217 | |
| 1648 (3498.536 kb) | 3198 (7074.427 kb) | lagging | -0.02 | |
| AT-skew reverse | 3199 (0 kb) | 4551 (3536.177 kb) | leading | 0.016 |
| 4552 (3542.212 kb) | 6136 (7074.427 kb) | lagging | 0.281 |
More G than C on the leading strand for replication.