Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
Genome size (bp): 4938920
Number of genes 4629
Oriloc predictions: Origin 4114 kb Terminus 1522 kb
Worning et al., 2006: Origin 4107 kb Terminus 1536 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1916.035 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 4067.49 kb
Consensus predictions: Origin 4114 kb Terminus 1522 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 817 | 0.00667 | 1588 |
| 1750 | 0.01667 | 3885 | |
| GC-skew reverse | 2899 | 0.00667 | 1548 |
| 4166 | 0.01333 | 3963 | |
| AT-skew forward | 1294 | 0.03333 | 2829 |
| 1840 | 0.01 | 4036 | |
| AT-skew reverse | 3134 | 0.09 | 2014 |
| 4263 | 0.07333 | 4171 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 817 (1587.5645 kb) | leading | 0.095 |
| 818 (1590.594 kb) | 1750 (3884.9965 kb) | lagging | 0.001 | |
| 1751 (3886.8575 kb) | 2236 (4937.574 kb) | NA | 0.075 | |
| GC-skew reverse | 2237 (0 kb) | 2899 (1547.5595 kb) | leading | 0.005 |
| 2900 (1548.0685 kb) | 4166 (3963.42 kb) | lagging | -0.089 | |
| 4167 (3964.9955 kb) | 4629 (4937.574 kb) | NA | -0.017 | |
| AT-skew forward | 1 (0 kb) | 1294 (2828.5695 kb) | NA | -0.183 |
| 1295 (2829.439 kb) | 1840 (4035.9385 kb) | lagging | -0.141 | |
| 1841 (4040.9405 kb) | 2236 (4937.574 kb) | leading | -0.195 | |
| AT-skew reverse | 2237 (0 kb) | 3134 (2014.04 kb) | NA | 0.165 |
| 3135 (2017.628 kb) | 4263 (4170.7365 kb) | lagging | 0.2 | |
| 4264 (4171.717 kb) | 4629 (4937.574 kb) | leading | 0.162 |