Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pectobacterium.
Genome size (bp): 5064019
Number of genes 4435
Oriloc predictions: Origin 0 kb Terminus 2554 kb
Worning et al., 2006: Origin 5062 kb Terminus 2553 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 426.996 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1430.99 kb, 4984.4 kb
Consensus predictions: Origin 0 kb Terminus 2554 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1207 | 0 | 2541 |
| GC-skew reverse | 3114 | 0 | 2542 |
| AT-skew forward | 1194 | 0 | 2510 |
| AT-skew reverse | 3096 | 0 | 2512 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1207 (2540.5065 kb) | leading | 0.145 |
| 1208 (2542.335 kb) | 2144 (5063.659 kb) | lagging | -0.037 | |
| GC-skew reverse | 2145 (0 kb) | 3114 (2542.156 kb) | leading | 0.048 |
| 3115 (2544.1555 kb) | 4435 (5063.659 kb) | lagging | -0.151 | |
| AT-skew forward | 1 (0 kb) | 1194 (2509.856 kb) | leading | -0.225 |
| 1195 (2517.955 kb) | 2144 (5063.659 kb) | lagging | -0.122 | |
| AT-skew reverse | 2145 (0 kb) | 3096 (2512.203 kb) | leading | 0.107 |
| 3097 (2512.853 kb) | 4435 (5063.659 kb) | lagging | 0.228 |
More G than C on the leading strand for replication.