Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.
Genome size (bp): 2812094
Number of genes 2461
Oriloc predictions: Origin 0 kb Terminus 966 kb
Worning et al., 2006: Origin 24 kb Terminus 965 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1271.883 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.9 kb
Consensus predictions: Origin 0 kb Terminus 966 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 453 | 0 | 940 |
| GC-skew reverse | 1537 | 0 | 971 |
| AT-skew forward | 473 | 0 | 970 |
| AT-skew reverse | 1578 | 0 | 1049 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 453 (940.105 kb) | leading | 0.147 |
| 454 (942.472 kb) | 1148 (2811.935 kb) | lagging | -0.067 | |
| GC-skew reverse | 1149 (0 kb) | 1537 (970.925 kb) | leading | 0.072 |
| 1538 (975.0985 kb) | 2461 (2811.935 kb) | lagging | -0.134 | |
| AT-skew forward | 1 (0 kb) | 473 (970.0765 kb) | leading | -0.17 |
| 474 (970.511 kb) | 1148 (2811.935 kb) | lagging | -0.063 | |
| AT-skew reverse | 1149 (0 kb) | 1578 (1049.1565 kb) | leading | 0.061 |
| 1579 (1051.2415 kb) | 2461 (2811.935 kb) | lagging | 0.185 |
More G than C on the leading strand for replication.