Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.
Genome size (bp): 3481691
Number of genes 2974
Oriloc predictions: Origin 0 kb Terminus 1834 kb
Worning et al., 2006: Origin 12 kb Terminus 1834 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1.553 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.85 kb, 1294.97 kb
Consensus predictions: Origin 0 kb Terminus 1834 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 944 | 0 | 1846 |
| GC-skew reverse | 2073 | 0 | 1836 |
| AT-skew forward | 933 | 0 | 1827 |
| AT-skew reverse | 2096 | 0 | 1869 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 944 (1845.506 kb) | leading | 0.117 |
| 945 (1846.842 kb) | 1453 (3481.573 kb) | lagging | -0.14 | |
| GC-skew reverse | 1454 (0 kb) | 2073 (1835.6425 kb) | leading | 0.122 |
| 2074 (1838.719 kb) | 2974 (3481.573 kb) | lagging | -0.14 | |
| AT-skew forward | 1 (0 kb) | 933 (1826.995 kb) | leading | -0.207 |
| 934 (1827.771 kb) | 1453 (3481.573 kb) | lagging | -0.093 | |
| AT-skew reverse | 1454 (0 kb) | 2096 (1869.154 kb) | leading | 0.096 |
| 2097 (1870.527 kb) | 2974 (3481.573 kb) | lagging | 0.219 |
More G than C on the leading strand for replication.