Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.
Genome size (bp): 3184243
Number of genes 2757
Oriloc predictions: Origin 3154 kb Terminus 1562 kb
Worning et al., 2006: Origin 3 kb Terminus 1551 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1191.179 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.78 kb
Consensus predictions: Origin 3154 kb Terminus 1562 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 817 | 0 | 1693 |
| GC-skew reverse | 1911 | 0 | 1554 |
| AT-skew forward | 758 | 0 | 1524 |
| AT-skew reverse | 1980 | 0.00667 | 1671 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 817 (1693.044 kb) | leading | 0.043 |
| 818 (1694.5805 kb) | 1337 (3184.135 kb) | lagging | -0.028 | |
| GC-skew reverse | 1338 (0 kb) | 1911 (1554.345 kb) | leading | 0.025 |
| 1912 (1557.0355 kb) | 2757 (3184.135 kb) | lagging | -0.041 | |
| AT-skew forward | 1 (0 kb) | 758 (1523.56 kb) | leading | -0.139 |
| 759 (1524.0505 kb) | 1337 (3184.135 kb) | lagging | -0.076 | |
| AT-skew reverse | 1338 (0 kb) | 1980 (1670.7045 kb) | leading | 0.084 |
| 1981 (1671.624 kb) | 2757 (3184.135 kb) | lagging | 0.12 |
More G than C on the leading strand for replication.