Rearranged Oriloc output example: Previous Index Next
Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.
Genome size (bp): 1894877
Number of genes 1982
Oriloc predictions: Origin 1532 kb Terminus 609 kb
Worning et al., 2006: Origin 1543 kb Terminus 606 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1524.36 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1523.67 kb
Consensus predictions: Origin 1524 kb Terminus 609 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 173 | 0.01333 | 365 |
| GC-skew reverse | 1210 | 0.00667 | 538 |
| AT-skew forward | 247 | 0 | 573 |
| 700 | 0 | 1524 | |
| AT-skew reverse | 1238 | 0 | 591 |
| 1799 | 0 | 1536 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 173 (365.194 kb) | leading | -0.053 |
| 174 (372.289 kb) | 891 (1891.601 kb) | NA | -0.111 | |
| GC-skew reverse | 892 (0 kb) | 1210 (538.108 kb) | leading | 0.13 |
| 1211 (542.6895 kb) | 1982 (1891.601 kb) | NA | 0.078 | |
| AT-skew forward | 1 (0 kb) | 247 (573.086 kb) | leading | -0.315 |
| 248 (574.73 kb) | 700 (1524.4895 kb) | lagging | 0.08 | |
| 701 (1525.794 kb) | 891 (1891.601 kb) | leading | -0.319 | |
| AT-skew reverse | 892 (0 kb) | 1238 (590.7325 kb) | leading | -0.058 |
| 1239 (591.3 kb) | 1799 (1535.845 kb) | lagging | 0.358 | |
| 1800 (1538.5205 kb) | 1982 (1891.601 kb) | leading | -0.033 |