Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.
Genome size (bp): 4074542
Number of genes 3395
Oriloc predictions: Origin 1 kb Terminus 2039 kb
Worning et al., 2006: Origin 4 kb Terminus 1994 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2526.57 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 86.15 kb
Consensus predictions: Origin 0 kb Terminus 2039 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 900 | NA | 2054 |
| GC-skew reverse | 2366 | NA | 2125 |
| AT-skew forward | 834 | NA | 1866 |
| AT-skew reverse | 2323 | NA | 2018 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 900 (2053.767 kb) | leading | 0.008 |
| 901 (2055.3165 kb) | 1526 (4074.029 kb) | lagging | -0.083 | |
| GC-skew reverse | 1527 (0 kb) | 2366 (2125.471 kb) | leading | 0.073 |
| 2367 (2127.681 kb) | 3395 (4074.029 kb) | lagging | -0.006 | |
| AT-skew forward | 1 (0 kb) | 834 (1866.239 kb) | leading | -0.276 |
| 835 (1867.976 kb) | 1526 (4074.029 kb) | lagging | -0.067 | |
| AT-skew reverse | 1527 (0 kb) | 2323 (2018.337 kb) | leading | 0.069 |
| 2324 (2020.015 kb) | 3395 (4074.029 kb) | lagging | 0.256 |
More G than C on the leading strand for replication.