Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.
Genome size (bp): 3173005
Number of genes 2327
Oriloc predictions: Origin 0 kb Terminus 1440 kb
Worning et al., 2006: Origin 3161 kb Terminus 1518 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 873.516 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): NA
Consensus predictions: Origin 0 kb Terminus 1440 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 621 | NA | 1446 |
| GC-skew reverse | 1600 | NA | 1444 |
| AT-skew forward | 590 | NA | 1412 |
| AT-skew reverse | 1622 | NA | 1522 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 621 (1446.399 kb) | leading | 0.013 |
| 622 (1446.589 kb) | 1162 (3170.031 kb) | lagging | -0.071 | |
| GC-skew reverse | 1163 (0 kb) | 1600 (1444.1415 kb) | leading | 0.071 |
| 1601 (1455.908 kb) | 2327 (3170.031 kb) | lagging | -0.017 | |
| AT-skew forward | 1 (0 kb) | 590 (1412.152 kb) | leading | -0.284 |
| 591 (1420.35 kb) | 1162 (3170.031 kb) | lagging | -0.072 | |
| AT-skew reverse | 1163 (0 kb) | 1622 (1522.1755 kb) | leading | 0.098 |
| 1623 (1525.5875 kb) | 2327 (3170.031 kb) | lagging | 0.27 |
More G than C on the leading strand for replication.