Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.
Genome size (bp): 2914771
Number of genes 2357
Oriloc predictions: Origin 5 kb Terminus 1599 kb
Worning et al., 2006: Origin 9 kb Terminus 2649 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2135 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): NA
Consensus predictions: Origin 0 kb Terminus 1599 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 756 | NA | 1646 |
| GC-skew reverse | 1773 | NA | 1599 |
| AT-skew forward | 710 | NA | 1518 |
| AT-skew reverse | 1790 | NA | 1631 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 756 (1646.121 kb) | leading | 0.025 |
| 757 (1648.081 kb) | 1169 (2911.815 kb) | lagging | -0.066 | |
| GC-skew reverse | 1170 (0 kb) | 1773 (1599.0185 kb) | leading | 0.067 |
| 1774 (1602.1695 kb) | 2357 (2911.815 kb) | lagging | -0.018 | |
| AT-skew forward | 1 (0 kb) | 710 (1517.942 kb) | leading | -0.229 |
| 711 (1518.6215 kb) | 1169 (2911.815 kb) | lagging | -0.076 | |
| AT-skew reverse | 1170 (0 kb) | 1790 (1631.303 kb) | leading | 0.072 |
| 1791 (1632.677 kb) | 2357 (2911.815 kb) | lagging | 0.268 |
More G than C on the leading strand for replication.