Rearranged Oriloc output example: Previous Index Next
Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus.
Genome size (bp): 1796846
Number of genes 1889
Oriloc predictions: Origin 0 kb Terminus 904 kb
Worning et al., 2006: Origin 1788 kb Terminus 906 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 0.058 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.87 kb, 311.49 kb, 1731.06 kb
Consensus predictions: Origin 0 kb Terminus 904 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 743 | NA | 893 |
| GC-skew reverse | 1146 | NA | 918 |
| 1461 | NA | 1282 | |
| 1790 | NA | 1680 | |
| AT-skew forward | 373 | NA | 456 |
| 513 | NA | 604 | |
| 789 | NA | 1117 | |
| AT-skew reverse | 1117 | NA | 806 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 743 (893.326 kb) | leading | 0.053 |
| 744 (893.7295 kb) | 960 (1796.789 kb) | lagging | -0.198 | |
| GC-skew reverse | 961 (0 kb) | 1146 (917.819 kb) | leading | 0.206 |
| 1147 (918.7735 kb) | 1461 (1282.375 kb) | lagging | -0.043 | |
| 1462 (1282.619 kb) | 1790 (1679.5225 kb) | lagging | -0.073 | |
| 1791 (1680.531 kb) | 1889 (1796.789 kb) | lagging | 0.026 | |
| AT-skew forward | 1 (0 kb) | 373 (456.094 kb) | leading | -0.206 |
| 374 (458.976 kb) | 513 (603.5035 kb) | leading | -0.24 | |
| 514 (606.088 kb) | 789 (1116.579 kb) | leading | -0.189 | |
| 790 (1121.603 kb) | 960 (1796.789 kb) | lagging | -0.116 | |
| AT-skew reverse | 961 (0 kb) | 1117 (806.196 kb) | leading | 0.146 |
| 1118 (808.493 kb) | 1889 (1796.789 kb) | lagging | 0.222 |
More G than C on the leading strand for replication.