Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Idiomarina.
Genome size (bp): 2839318
Number of genes 2628
Oriloc predictions: Origin 2829 kb Terminus 690 kb
Worning et al., 2006: Origin 2759 kb Terminus 772 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2831.645 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1.04 kb, 1578.39 kb
Consensus predictions: Origin 0 kb Terminus 690 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 417 | 0 | 704 |
| GC-skew reverse | 1412 | 0.00889 | 695 |
| 1812 | 0.00667 | 1338 | |
| 1821 | 0.00889 | 1354 | |
| AT-skew forward | 582 | 0.04 | 1147 |
| AT-skew reverse | 1561 | 0.01333 | 952 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 417 (703.908 kb) | leading | 0.077 |
| 418 (705.464 kb) | 1188 (2839.274 kb) | lagging | -0.069 | |
| GC-skew reverse | 1189 (0 kb) | 1412 (694.715 kb) | leading | 0.06 |
| 1413 (699.4815 kb) | 1812 (1338.4685 kb) | lagging | -0.111 | |
| 1813 (1339.738 kb) | 1821 (1354.2275 kb) | lagging | 0.086 | |
| 1822 (1369.523 kb) | 2628 (2839.274 kb) | lagging | -0.088 | |
| AT-skew forward | 1 (0 kb) | 582 (1146.9815 kb) | NA | -0.138 |
| 583 (1150.96 kb) | 1188 (2839.274 kb) | lagging | -0.102 | |
| AT-skew reverse | 1189 (0 kb) | 1561 (951.8 kb) | NA | 0.122 |
| 1562 (952.912 kb) | 2628 (2839.274 kb) | lagging | 0.158 |