Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.
Genome size (bp): 4126292
Number of genes 3736
Oriloc predictions: Origin 222 kb Terminus 2344 kb
Worning et al., 2006: Origin 225 kb Terminus 2390 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2786.353 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 311.44 kb
Consensus predictions: Origin 222 kb Terminus 2344 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 620 | NA | 1302 |
| 1124 | NA | 2346 | |
| GC-skew reverse | 1928 | NA | 247 |
| 2776 | NA | 2323 | |
| AT-skew forward | 91 | NA | 236 |
| 1145 | NA | 2405 | |
| AT-skew reverse | 1926 | NA | 241 |
| 2749 | NA | 2237 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 620 (1302.4425 kb) | leading | -0.008 |
| 621 (1304.166 kb) | 1124 (2346.049 kb) | leading | 0.009 | |
| 1125 (2347.94 kb) | 1801 (4125.633 kb) | lagging | -0.097 | |
| GC-skew reverse | 1802 (0 kb) | 1928 (246.892 kb) | lagging | -0.017 |
| 1929 (251.843 kb) | 2776 (2322.7165 kb) | leading | 0.088 | |
| 2777 (2324.561 kb) | 3736 (4125.633 kb) | lagging | -0.002 | |
| AT-skew forward | 1 (0 kb) | 91 (236.4735 kb) | lagging | -0.086 |
| 92 (237.258 kb) | 1145 (2404.721 kb) | leading | -0.247 | |
| 1146 (2408.569 kb) | 1801 (4125.633 kb) | lagging | -0.063 | |
| AT-skew reverse | 1802 (0 kb) | 1926 (240.538 kb) | lagging | 0.222 |
| 1927 (244.3055 kb) | 2749 (2237.1635 kb) | leading | 0.092 | |
| 2750 (2238.079 kb) | 3736 (4125.633 kb) | lagging | 0.242 |
More G than C on the leading strand for replication.