Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.
Genome size (bp): 4352825
Number of genes 3791
Oriloc predictions: Origin 4134 kb Terminus 1823 kb
Worning et al., 2006: Origin 4155 kb Terminus 1986 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 4154.414 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.99 kb
Consensus predictions: Origin 4134 kb Terminus 1823 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 417 | 0.00333 | 984 |
| 439 | 0 | 1042 | |
| 910 | 0.01 | 2014 | |
| 1644 | 0.04833 | 3866 | |
| GC-skew reverse | 2679 | 0 | 2003 |
| AT-skew forward | 897 | 0.00667 | 1977 |
| 1643 | 0.01 | 3865 | |
| AT-skew reverse | 2695 | 0 | 2030 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 417 (984.363 kb) | leading | -0.087 |
| 418 (986.183 kb) | 439 (1041.88 kb) | leading | 0.034 | |
| 440 (1049.738 kb) | 910 (2014.297 kb) | NA | -0.109 | |
| 911 (2014.8955 kb) | 1644 (3865.7675 kb) | lagging | -0.19 | |
| 1645 (3866.604 kb) | 1880 (4352.278 kb) | NA | -0.136 | |
| GC-skew reverse | 1881 (0 kb) | 2679 (2003.18 kb) | leading | 0.192 |
| 2680 (2004.5125 kb) | 3791 (4352.278 kb) | lagging | 0.093 | |
| AT-skew forward | 1 (0 kb) | 897 (1976.6665 kb) | leading | -0.422 |
| 898 (1978.284 kb) | 1643 (3864.838 kb) | lagging | -0.315 | |
| 1644 (3865.7675 kb) | 1880 (4352.278 kb) | NA | -0.409 | |
| AT-skew reverse | 1881 (0 kb) | 2695 (2029.884 kb) | leading | 0.316 |
| 2696 (2030.875 kb) | 3791 (4352.278 kb) | lagging | 0.444 |
More G than C on the leading strand for replication.