Methanosphaera stadtmanae

Rearranged Oriloc output example: Previous Index Next

Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanosphaera.
Genome size (bp): 1767403
Number of genes 1534
Oriloc predictions: Origin 30 kb Terminus 836 kb
Worning et al., 2006: Origin 32 kb Terminus 874 kb
Position(s) of the ORC/Cdc6 gene(s): 396.58 kb, 1557.31 kb, 1.29 kb, 744.11 kb
Consensus predictions: Origin 30 kb Terminus 836 kb
Significant breakpoints (p-value <0.05):

Breakpoints P-value Chromosome coordinate (kb)

GC-skew forward 420 0 893

GC-skew reverse 1081 0.02889 928

1120 0.00222 993

1201 0.00222 1097

Segments:

From (index/coord) To (index/coord) Strand Slope

GC-skew forward 1 (0 kb) 420 (893.3115 kb) leading 0.122

421 (897.3195 kb) 749 (1767.356 kb) lagging -0.055

GC-skew reverse 750 (0 kb) 1081 (928.2365 kb) NA 0.029

1082 (928.995 kb) 1120 (992.785 kb) lagging -0.204

1121 (993.823 kb) 1201 (1096.9145 kb) lagging 0.117

1202 (1097.6935 kb) 1534 (1767.356 kb) lagging -0.192

More G than C on the leading strand for replication - for forward encoded genes.

	Breakpoints	P-value	Chromosome coordinate (kb)
GC-skew forward	420	0	893
GC-skew reverse	1081	0.02889	928
	1120	0.00222	993
	1201	0.00222	1097

	From (index/coord)	To (index/coord)	Strand	Slope
GC-skew forward	1 (0 kb)	420 (893.3115 kb)	leading	0.122
GC-skew forward	421 (897.3195 kb)	749 (1767.356 kb)	lagging	-0.055
GC-skew reverse	750 (0 kb)	1081 (928.2365 kb)	NA	0.029
	1082 (928.995 kb)	1120 (992.785 kb)	lagging	-0.204
	1121 (993.823 kb)	1201 (1096.9145 kb)	lagging	0.117
	1202 (1097.6935 kb)	1534 (1767.356 kb)	lagging	-0.192