Rearranged Oriloc output example: Previous Index Next
Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Frankineae; Frankiaceae; Frankia.
Genome size (bp): 5433628
Number of genes 4499
Oriloc predictions: Origin 32 kb Terminus 2755 kb
Worning et al., 2006: Origin 45 kb Terminus 2755 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 5307.541 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.88 kb
Consensus predictions: Origin 0 kb Terminus 2755 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1269 | 0 | 2713 |
| GC-skew reverse | 3432 | 0 | 3170 |
| AT-skew forward | 949 | 0.02 | 2009 |
| 1275 | 0.02667 | 2727 | |
| AT-skew reverse | 3249 | 0 | 2759 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1269 (2712.858 kb) | leading | -0.055 |
| 1270 (2713.326 kb) | 2183 (5432.789 kb) | lagging | -0.122 | |
| GC-skew reverse | 2184 (0 kb) | 3432 (3169.5545 kb) | leading | 0.123 |
| 3433 (3175.75 kb) | 4499 (5432.789 kb) | lagging | 0.061 | |
| AT-skew forward | 1 (0 kb) | 949 (2008.5885 kb) | leading | -0.311 |
| 950 (2009.8335 kb) | 1275 (2727.4375 kb) | leading | -0.198 | |
| 1276 (2728.9515 kb) | 2183 (5432.789 kb) | lagging | -0.095 | |
| AT-skew reverse | 2184 (0 kb) | 3249 (2758.7295 kb) | leading | 0.074 |
| 3250 (2763.4515 kb) | 4499 (5432.789 kb) | lagging | 0.299 |
More G than C on the leading strand for replication.