Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.
Genome size (bp): 3294563
Number of genes 2965
Oriloc predictions: Origin 0 kb Terminus 1262 kb
Worning et al., 2006: Origin 5 kb Terminus 1348 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 53.538 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 302.53 kb, 2803.09 kb
Consensus predictions: Origin 0 kb Terminus 1262 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 708 | NA | 1334 |
| GC-skew reverse | 1945 | NA | 1345 |
| AT-skew forward | 699 | NA | 1321 |
| AT-skew reverse | 1921 | NA | 1248 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 708 (1333.6525 kb) | leading | 0 |
| 709 (1334.2875 kb) | 1449 (3294.336 kb) | lagging | -0.081 | |
| GC-skew reverse | 1450 (0 kb) | 1945 (1345.499 kb) | leading | 0.092 |
| 1946 (1345.8775 kb) | 2965 (3294.336 kb) | lagging | -0.004 | |
| AT-skew forward | 1 (0 kb) | 699 (1320.843 kb) | leading | -0.203 |
| 700 (1322.306 kb) | 1449 (3294.336 kb) | lagging | -0.005 | |
| AT-skew reverse | 1450 (0 kb) | 1921 (1247.63 kb) | leading | 0.027 |
| 1922 (1254.052 kb) | 2965 (3294.336 kb) | lagging | 0.19 |
More G than C on the leading strand for replication.