Search and mask repeated sequences
Useful links
Exercise 2
Useful links
1- Compare one sequence to a sequence database
2- Compare a sequence profile to a sequence database
- PSI-BLAST (NCBI, USA)
3- Compare a sequence to a database of protein motifs
- ProfileScan (SIB, Switzerland)
Exercise 3
Usefuls links
Review on web sites and computer tools for sequence alignment
1- Pairwise sequence alignment
- LFASTA (PBIL, France)
- BLAST 2 sequences (NCBI, USA)
2- Multiple alignments
- ClustalW (protein) (PBIL, France)
- ClustalW (DNA) (PBIL, France)
- ClustalW (EBI, UK)
- DIALIGN (BiBiserv, Germany)
- T-Coffee (EMBnet, Switzerland)
Exercise 4
Usefuls links
Review on phylogeny programs
Phylogenetic programs on line
Exercise 5