 9h30-10h30 | Why do we need trees? | |
| Paul Harvey - Department of Zoology, University of Oxford | ||
 10h30-11h | Coffee break | |
| 11h-12h | Caribbean Jungles and Lizard Malaria | |
| Michael Charleston - Department of Zoology, University of Oxford | ||
| 12h-14h | Lunch | |
| 14h-15h | A phylogenomics approach for the understanding of organellar origins | |
| Siv G. E. Andersson - The Small Genome Sequencing Group, Department of Molecular Evolution, Uppsala University | ||
| 15h-15h20 | Coffee break | |
| 15h20-16h20 | Where is the root of the universal tree of life? Methodological problems in ancient phylogenies | |
| Hervé Philippe - Équipe Phylogénie et Évolution Moléculaires, Université de Paris-Sud | ||
| 16h20-16h40 | Coffee break | |
| 16h40-17h40 | Coalescence and the reconstruction of the history of populations: bottlenecks vs selective sweeps | |
| Nicolas Galtier - Laboratoire Génome, Populations, Interactions, Université de Montpellier II | ||
| 17h40-18h | Coffee break | |
| 18h-19h | Problem presentations (Propositions of collaboration)(I) | |
| 18h-18h30: Problem 1 | ||
| 20h | Diner (between 120 and 150 francs) |
| 9h30-10h30 | Phylogeny and recent evolution of rabies virus and bovine respiratory syncytial virus | |
| Hervé Bourhy - Unité de la Rage, Institut Pasteur | ||
| 10h30-11h | Coffee break | |
| 11h-12h | Bayesian methods for molecular phylogenetics | |
| David Balding - Department of Applied Statistics, University of Reading | ||
| 12h-14h | Lunch | |
| 14h-15h | Phylogenetic relationships between Human Immunodeficiency Viruses (HIV) and Simian Immunodeficiency Viruses (SIV) from Africa: implications for the origin of HIV | |
| Michaela Müller-Trutwin - Biologie des Rétrovirus, Institut Pasteur | ||
| 15h-15h20 | Coffee break | |
| 15h20-16h20 | Algorithms for combinatorial approaches in phylogenetic analyses | |
| Vincent Berry - Laboratoire d'Informatique, de Robotique et de Micro-électronique de Montpellier | ||
| 16h20-16h40 | Coffee break | |
| 16h40-17h40 | Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate | |
| Abstract | ||
| Laurent Duret (work done with Dominique Mouchiroud) - Laboratoire de Biométrie, Génétique et Biologie des Populations, Université Claude Bernard - Lyon I | ||
| 17h40-18h | Coffee break | |
| 18h-19h | Problem presentations (Propositions of collaboration)(II) | |
| 18h-18h30: Problem 2 | ||
| 18h30-19h: Problem 2 |
| 9h30-10h30 | Archaeal evolution: insight from multi-genome comparison of Pyrococcus species | |
| Patrick Forterre - Institut de Génétique et Microbiologie, Université Paris-Sud, Orsay | ||
| 10h30-11h | Break | |
| 11h-12h | Methods and problems in reconstructing recombinations in sequence data | |
| Abstract | ||
| Jotun Hein (work done with Carsten Wiuf and Thomas Christensen) - Institute of Biological Sciences, University of Aarhus | ||
| 12h-14h | Lunch | |
| 14h-15h | Evidence for a relationship between algorithmic schemes and shape of inferred trees | |
| Olivier Gascuel - Laboratoire d'Informatique, de Robotique et de Micro-électronique de Montpellier | ||
| 15h-15h20 | Break | |
| 15h20-16h20 | Can we have confidence in a tree representation ? | |
| Alain Guénoche - Laboratoire d'Informatique de Marseille | ||
| 16h20-16h40 | Break | |
| 16h40-17h40 | The Brick and the Module: unraveling gene (protein) history | Bernard Labedan - Institut de Génétique et Microbiologie, Université Paris-Sud, Orsay |
