Last updated on 2024-07-27 11:49:20 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| NetLogoR | 13 | ||
| quickPlot | 13 | ||
| reproducible | 13 | ||
| Require | 1 | 12 | |
| SpaDES.core | 2 | 11 |
Current CRAN status: NOTE: 13
Version: 1.0.5
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘fastshp’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.5
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
bbox.Rd: extent, coordinates
coordinates.Rd: extent
extent.Rd: coordinates
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: NOTE: 13
Version: 1.0.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘fastshp’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [9m/11m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(Require)
> library(testthat)
Attaching package: 'testthat'
The following object is masked from 'package:Require':
setup
> test_check("Require")
Error in messagesAboutWarnings(w, toInstall, returnDetails = returnDetails, :
package failed: rlang; retrying ...
Error in messagesAboutWarnings(w, toInstall, returnDetails = returnDetails, :
package failed: rlang; retrying ...
Error in messagesAboutWarnings(w, toInstall, returnDetails = returnDetails, :
package failed: rlang; retrying ...
Error in messagesAboutWarnings(w, toInstall, returnDetails = returnDetails, :
package failed: crayon; retrying ...
Error in messagesAboutWarnings(w, toInstall, returnDetails = returnDetails, :
package failed: crayon; retrying ...
Error in messagesAboutWarnings(w, toInstall, returnDetails = returnDetails, :
package failed: crayon; retrying ...
Error in messagesAboutWarnings(w, toInstall, returnDetails = returnDetails, :
package failed: fpCompare; retrying ...
Error in messagesAboutWarnings(w, toInstall, returnDetails = returnDetails, :
package failed: fpCompare; retrying ...
Error in messagesAboutWarnings(w, toInstall, returnDetails = returnDetails, :
package failed: fpCompare; retrying ...
Error in messagesAboutWarnings(w, toInstall, returnDetails = returnDetails, :
package failed: data.table; retrying ...
Error in messagesAboutWarnings(w, toInstall, returnDetails = returnDetails, :
package failed: data.table; retrying ...
Error in messagesAboutWarnings(w, toInstall, returnDetails = returnDetails, :
package failed: data.table; retrying ...
Error in messagesAboutWarnings(w, toInstall, returnDetails = returnDetails, :
package failed: Require; retrying ...
Error in messagesAboutWarnings(w, toInstall, returnDetails = returnDetails, :
package failed: Require; retrying ...
Error in messagesAboutWarnings(w, toInstall, returnDetails = returnDetails, :
package failed: Require; retrying ...
[ FAIL 5 | WARN 8 | SKIP 7 | PASS 55 ]
══ Skipped tests (7) ═══════════════════════════════════════════════════════════
• On CRAN (2): 'test-05packagesLong_testthat.R:3:3',
'test-06pkgDep_testthat.R:3:3'
• empty test (5): 'test-07pkgSnapshotLong_testthat.R:1:1',
'test-08modules_testthat.R:1:1', 'test-09pkgSnapshotLong_testthat.R:1:1',
'test-10DifferentPkgs_testthat.R:1:1', 'test-11misc_testthat.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-00pkgSnapshot_testthat.R:143:5'): test 1 ───────────────────────
Error in `matrix(unlist(deps), ncol = length(deps))`: 'data' must be of a vector type, was 'NULL'
Backtrace:
▆
1. └─Require::pkgSnapshot(...) at test-00pkgSnapshot_testthat.R:143:5
2. └─Require:::doInstalledPackages(libPaths, purge, includeBase)
3. ├─data.table::as.data.table(...)
4. └─Require:::.installed.pkgs(...)
5. └─base::lapply(...)
6. └─Require (local) FUN(X[[i]], ...)
7. ├─base::cbind(mat, matrix(unlist(deps), ncol = length(deps)))
8. └─base::matrix(unlist(deps), ncol = length(deps))
── Failure ('test-01packages_testthat.R:36:3'): test 1 ─────────────────────────
all(grepl("was built under", warns)) is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-01packages_testthat.R:42:3'): test 1 ─────────────────────────
{
...
} is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-01packages_testthat.R:52:3'): test 1 ─────────────────────────
{
...
} is not TRUE
`actual`: FALSE
`expected`: TRUE
── Error ('test-01packages_testthat.R:73:3'): test 1 ───────────────────────────
<packageNotFoundError/error/condition>
Error in `find.package(pkgs, lib)`: there is no package called 'fpCompare'
Backtrace:
▆
1. ├─base::suppressMessages(remove.packages("fpCompare", lib = dir1)) at test-01packages_testthat.R:73:3
2. │ └─base::withCallingHandlers(...)
3. └─utils::remove.packages("fpCompare", lib = dir1)
4. └─base::find.package(pkgs, lib)
[ FAIL 5 | WARN 8 | SKIP 7 | PASS 55 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Current CRAN status: ERROR: 2, NOTE: 11
Version: 2.1.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘NLMR’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 2.1.0
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
SpaDES.core-package.Rd: copy, equalExtent, getColors,
divergentColors, layerNames, numLayers, Plot, clearPlot,
clickValues, clickExtent, clickCoordinates, dev, newPlot, rePlot
depsLoadOrder.Rd: igraph
downloadData.Rd: prepInputs
emptyEventList.Rd: data.table
moduleDiagram.Rd: igraph
moduleGraph.Rd: igraph
simList-accessors-events.Rd: data.table
simList-class.Rd: data.table
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 2.1.0
Check: installed package size
Result: NOTE
installed size is 6.7Mb
sub-directories of 1Mb or more:
R 5.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 2.1.0
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘ii-modules.Rmd’
...
restartSpades()
The initial state of the last1events are cached and savedin the simList located at savedSimEnv()$.sim,as sim$.recoverableObjs, with the most recent eventthe first element in the list, 2nd most recent event = the second most recent event, etc. The objects contained in each of those are only the objects that may havechanged, according to the metadata for each module. To recover, use:cli-92167-1
Because of an interrupted spades call, the sim object at the start of the interrupted event was saved in
SpaDES.core:::savedSimEnv()$.sim
It will be deleted on next call to spades().
When sourcing ‘ii-modules.R’:
Error: Package 'NLMR' not available. Please install it using:
install.packages('NLMR', repos = 'https://predictiveecology.r-universe.dev')
Execution halted
when running code in ‘iii-cache.Rmd’
...
The initial state of the last1events are cached and savedin the simList located at savedSimEnv()$.sim,as sim$.recoverableObjs, with the most recent eventthe first element in the list, 2nd most recent event = the second most recent event, etc. The objects contained in each of those are only the objects that may havechanged, according to the metadata for each module. To recover, use:cli-92167-1
Because of an interrupted spades call, the sim object at the start of the interrupted event was saved in
SpaDES.core:::savedSimEnv()$.sim
It will be deleted on next call to spades().
Timing stopped at: 0.191 0.014 0.215
When sourcing ‘iii-cache.R’:
Error: Package 'NLMR' not available. Please install it using:
install.packages('NLMR', repos = 'https://predictiveecology.r-universe.dev')
Execution halted
‘i-introduction.Rmd’ using ‘UTF-8’... [3s/3s] OK
‘ii-modules.Rmd’ using ‘UTF-8’... failed
‘iii-cache.Rmd’ using ‘UTF-8’... failed
‘iv-advanced.Rmd’ using ‘UTF-8’... [0s/0s] OK
‘v-automated-testing.Rmd’ using ‘UTF-8’... [0s/0s] OK
Flavor: r-oldrel-macos-arm64
Version: 2.1.0
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘ii-modules.Rmd’
...
restartSpades()
The initial state of the last1events are cached and savedin the simList located at savedSimEnv()$.sim,as sim$.recoverableObjs, with the most recent eventthe first element in the list, 2nd most recent event = the second most recent event, etc. The objects contained in each of those are only the objects that may havechanged, according to the metadata for each module. To recover, use:cli-98058-1
Because of an interrupted spades call, the sim object at the start of the interrupted event was saved in
SpaDES.core:::savedSimEnv()$.sim
It will be deleted on next call to spades().
When sourcing ‘ii-modules.R’:
Error: Package 'NLMR' not available. Please install it using:
install.packages('NLMR', repos = 'https://predictiveecology.r-universe.dev')
Execution halted
when running code in ‘iii-cache.Rmd’
...
The initial state of the last1events are cached and savedin the simList located at savedSimEnv()$.sim,as sim$.recoverableObjs, with the most recent eventthe first element in the list, 2nd most recent event = the second most recent event, etc. The objects contained in each of those are only the objects that may havechanged, according to the metadata for each module. To recover, use:cli-98058-1
Because of an interrupted spades call, the sim object at the start of the interrupted event was saved in
SpaDES.core:::savedSimEnv()$.sim
It will be deleted on next call to spades().
Timing stopped at: 0.326 0.03 0.418
When sourcing ‘iii-cache.R’:
Error: Package 'NLMR' not available. Please install it using:
install.packages('NLMR', repos = 'https://predictiveecology.r-universe.dev')
Execution halted
‘i-introduction.Rmd’ using ‘UTF-8’... [5s/6s] OK
‘ii-modules.Rmd’ using ‘UTF-8’... failed
‘iii-cache.Rmd’ using ‘UTF-8’... failed
‘iv-advanced.Rmd’ using ‘UTF-8’... [0s/1s] OK
‘v-automated-testing.Rmd’ using ‘UTF-8’... [0s/1s] OK
Flavor: r-oldrel-macos-x86_64