Last updated on 2025-12-09 23:52:01 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| miesmuschel | 13 | ||
| mlr | 2 | 11 | |
| mlr3pipelines | 3 | 10 | |
| paradox | 13 | ||
| ParamHelpers | 13 |
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 2.19.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘Rmpi’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.19.3
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
R 2.0Mb
data 2.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 3, OK: 10
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [102s/50s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-10 08:43:49.618638: Isomap START
> test_pipeop_isomap.R: 2025-12-10 08:43:49.6189: constructing knn graph
> test_pipeop_isomap.R: 2025-12-10 08:43:49.622415: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-10 08:43:49.628756: Classical Scaling
> test_pipeop_isomap.R: 2025-12-10 08:43:49.639241: Isomap START
> test_pipeop_isomap.R: 2025-12-10 08:43:49.639397: constructing knn graph
> test_pipeop_isomap.R: 2025-12-10 08:43:49.641802: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-10 08:43:49.647847: Classical Scaling
> test_pipeop_isomap.R: 2025-12-10 08:43:49.654545: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-10 08:43:49.654716: constructing knn graph
> test_pipeop_isomap.R: 2025-12-10 08:43:49.659511: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-10 08:43:49.674749: embedding
> test_pipeop_isomap.R: 2025-12-10 08:43:49.675267: DONE
> test_pipeop_isomap.R: 2025-12-10 08:43:49.690618: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-10 08:43:49.69078: constructing knn graph
> test_pipeop_isomap.R: 2025-12-10 08:43:49.695312: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-10 08:43:49.710016: embedding
> test_pipeop_isomap.R: 2025-12-10 08:43:49.710451: DONE
> test_pipeop_isomap.R: 2025-12-10 08:43:49.729322: Isomap START
> test_pipeop_isomap.R: 2025-12-10 08:43:49.729447: constructing knn graph
> test_pipeop_isomap.R: 2025-12-10 08:43:49.733624: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-10 08:43:49.767407: Classical Scaling
> test_pipeop_isomap.R: 2025-12-10 08:43:49.775188: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-10 08:43:49.77536: constructing knn graph
> test_pipeop_isomap.R: 2025-12-10 08:43:49.788354: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-10 08:43:49.866877: embedding
> test_pipeop_isomap.R: 2025-12-10 08:43:49.868175: DONE
> test_pipeop_isomap.R: 2025-12-10 08:43:49.937525: Isomap START
> test_pipeop_isomap.R: 2025-12-10 08:43:49.937673: constructing knn graph
> test_pipeop_isomap.R: 2025-12-10 08:43:49.939848: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-10 08:43:49.945968: Classical Scaling
> test_pipeop_isomap.R: 2025-12-10 08:43:49.953253: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-10 08:43:49.953441: constructing knn graph
> test_pipeop_isomap.R: 2025-12-10 08:43:49.957802: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-10 08:43:49.972774: embedding
> test_pipeop_isomap.R: 2025-12-10 08:43:49.973204: DONE
> test_pipeop_isomap.R: 2025-12-10 08:43:50.002619: Isomap START
> test_pipeop_isomap.R: 2025-12-10 08:43:50.00276: constructing knn graph
> test_pipeop_isomap.R: 2025-12-10 08:43:50.005277: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-10 08:43:50.011414: Classical Scaling
> test_pipeop_isomap.R: 2025-12-10 08:43:50.022442: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-10 08:43:50.022629: constructing knn graph
> test_pipeop_isomap.R: 2025-12-10 08:43:50.031799: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-10 08:43:50.046788: embedding
> test_pipeop_isomap.R: 2025-12-10 08:43:50.047267: DONE
> test_pipeop_isomap.R: 2025-12-10 08:43:50.069116: Isomap START
> test_pipeop_isomap.R: 2025-12-10 08:43:50.069248: constructing knn graph
> test_pipeop_isomap.R: 2025-12-10 08:43:50.071557: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-10 08:43:50.077691: Classical Scaling
> test_pipeop_isomap.R: 2025-12-10 08:43:50.087844: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-10 08:43:50.088009: constructing knn graph
> test_pipeop_isomap.R: 2025-12-10 08:43:50.092262: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-10 08:43:50.10755: embedding
> test_pipeop_isomap.R: 2025-12-10 08:43:50.107973: DONE
> test_pipeop_isomap.R: 2025-12-10 08:43:50.321879: Isomap START
> test_pipeop_isomap.R: 2025-12-10 08:43:50.322028: constructing knn graph
> test_pipeop_isomap.R: 2025-12-10 08:43:50.324131: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-10 08:43:50.330289: Classical Scaling
> test_pipeop_isomap.R: 2025-12-10 08:43:50.340967: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-10 08:43:50.341164: constructing knn graph
> test_pipeop_isomap.R: 2025-12-10 08:43:50.345851: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-10 08:43:50.360846: embedding
> test_pipeop_isomap.R: 2025-12-10 08:43:50.361334: DONE
> test_pipeop_isomap.R: 2025-12-10 08:43:50.378589: Isomap START
> test_pipeop_isomap.R: 2025-12-10 08:43:50.378758: constructing knn graph
> test_pipeop_isomap.R: 2025-12-10 08:43:50.381389: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-10 08:43:50.387696: Classical Scaling
> test_pipeop_isomap.R: 2025-12-10 08:43:50.398153: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-10 08:43:50.398324: constructing knn graph
> test_pipeop_isomap.R: 2025-12-10 08:43:50.403328: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-10 08:43:50.418301: embedding
> test_pipeop_isomap.R: 2025-12-10 08:43:50.418735: DONE
> test_pipeop_isomap.R: 2025-12-10 08:43:50.436791: Isomap START
> test_pipeop_isomap.R: 2025-12-10 08:43:50.436935: constructing knn graph
> test_pipeop_isomap.R: 2025-12-10 08:43:50.439429: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-10 08:43:50.445716: Classical Scaling
> test_pipeop_isomap.R: 2025-12-10 08:43:50.462488: Isomap START
> test_pipeop_isomap.R: 2025-12-10 08:43:50.462601: constructing knn graph
> test_pipeop_isomap.R: 2025-12-10 08:43:50.46485: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-10 08:43:50.470842: Classical Scaling
> test_pipeop_isomap.R: 2025-12-10 08:43:50.47567: Isomap START
> test_pipeop_isomap.R: 2025-12-10 08:43:50.475773: constructing knn graph
> test_pipeop_isomap.R: 2025-12-10 08:43:50.47795: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-10 08:43:50.483943: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [305s/270s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-09 16:07:19.619997: Isomap START
> test_pipeop_isomap.R: 2025-12-09 16:07:19.620538: constructing knn graph
> test_pipeop_isomap.R: 2025-12-09 16:07:19.644003: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-09 16:07:19.673947: Classical Scaling
> test_pipeop_isomap.R: 2025-12-09 16:07:19.743777: Isomap START
> test_pipeop_isomap.R: 2025-12-09 16:07:19.74408: constructing knn graph
> test_pipeop_isomap.R: 2025-12-09 16:07:19.751843: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-09 16:07:19.792889: Classical Scaling
> test_pipeop_isomap.R: 2025-12-09 16:07:19.82943: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-09 16:07:19.829912: constructing knn graph
> test_pipeop_isomap.R: 2025-12-09 16:07:19.847647: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-09 16:07:19.921871: embedding
> test_pipeop_isomap.R: 2025-12-09 16:07:19.923939: DONE
> test_pipeop_isomap.R: 2025-12-09 16:07:19.961705: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-09 16:07:19.962004: constructing knn graph
> test_pipeop_isomap.R: 2025-12-09 16:07:19.983454: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-09 16:07:20.062945: embedding
> test_pipeop_isomap.R: 2025-12-09 16:07:20.064031: DONE
> test_pipeop_isomap.R: 2025-12-09 16:07:20.173639: Isomap START
> test_pipeop_isomap.R: 2025-12-09 16:07:20.173944: constructing knn graph
> test_pipeop_isomap.R: 2025-12-09 16:07:20.189168: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-09 16:07:20.377096: Classical Scaling
> test_pipeop_isomap.R: 2025-12-09 16:07:20.424161: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-09 16:07:20.425716: constructing knn graph
> test_pipeop_isomap.R: 2025-12-09 16:07:20.514642: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-09 16:07:20.868627: embedding
> test_pipeop_isomap.R: 2025-12-09 16:07:20.872181: DONE
> test_pipeop_isomap.R: 2025-12-09 16:07:21.048374: Isomap START
> test_pipeop_isomap.R: 2025-12-09 16:07:21.048659: constructing knn graph
> test_pipeop_isomap.R: 2025-12-09 16:07:21.067327: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-09 16:07:21.088842: Classical Scaling
> test_pipeop_isomap.R: 2025-12-09 16:07:21.124747: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-09 16:07:21.125179: constructing knn graph
> test_pipeop_isomap.R: 2025-12-09 16:07:21.154764: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-09 16:07:21.236982: embedding
> test_pipeop_isomap.R: 2025-12-09 16:07:21.238219: DONE
> test_pipeop_isomap.R: 2025-12-09 16:07:21.408425: Isomap START
> test_pipeop_isomap.R: 2025-12-09 16:07:21.408724: constructing knn graph
> test_pipeop_isomap.R: 2025-12-09 16:07:21.422416: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-09 16:07:21.450263: Classical Scaling
> test_pipeop_isomap.R: 2025-12-09 16:07:21.52301: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-09 16:07:21.523478: constructing knn graph
> test_pipeop_isomap.R: 2025-12-09 16:07:21.542765: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-09 16:07:21.62651: embedding
> test_pipeop_isomap.R: 2025-12-09 16:07:21.646649: DONE
> test_pipeop_isomap.R: 2025-12-09 16:07:21.738923: Isomap START
> test_pipeop_isomap.R: 2025-12-09 16:07:21.739206: constructing knn graph
> test_pipeop_isomap.R: 2025-12-09 16:07:21.760293: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-09 16:07:21.781611: Classical Scaling
> test_pipeop_isomap.R: 2025-12-09 16:07:21.833985: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-09 16:07:21.834404: constructing knn graph
> test_pipeop_isomap.R: 2025-12-09 16:07:21.867664: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-09 16:07:21.954202: embedding
> test_pipeop_isomap.R: 2025-12-09 16:07:21.955299: DONE
> test_pipeop_isomap.R: 2025-12-09 16:07:22.055734: Isomap START
> test_pipeop_isomap.R: 2025-12-09 16:07:22.056014: constructing knn graph
> test_pipeop_isomap.R: 2025-12-09 16:07:22.07328: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-09 16:07:22.100064: Classical Scaling
> test_pipeop_isomap.R: 2025-12-09 16:07:22.188262: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-09 16:07:22.188712: constructing knn graph
> test_pipeop_isomap.R: 2025-12-09 16:07:22.203382: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-09 16:07:22.275965: embedding
> test_pipeop_isomap.R: 2025-12-09 16:07:22.277112: DONE
> test_pipeop_isomap.R: 2025-12-09 16:07:22.372693: Isomap START
> test_pipeop_isomap.R: 2025-12-09 16:07:22.373009: constructing knn graph
> test_pipeop_isomap.R: 2025-12-09 16:07:22.387994: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-09 16:07:22.409337: Classical Scaling
> test_pipeop_isomap.R: 2025-12-09 16:07:22.492185: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-09 16:07:22.493826: constructing knn graph
> test_pipeop_isomap.R: 2025-12-09 16:07:22.51532: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-09 16:07:22.5849: embedding
> test_pipeop_isomap.R: 2025-12-09 16:07:22.586057: DONE
> test_pipeop_isomap.R: 2025-12-09 16:07:22.696933: Isomap START
> test_pipeop_isomap.R: 2025-12-09 16:07:22.697253: constructing knn graph
> test_pipeop_isomap.R: 2025-12-09 16:07:22.710701: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-09 16:07:22.735709: Classical Scaling
> test_pipeop_isomap.R: 2025-12-09 16:07:22.819488: Isomap START
> test_pipeop_isomap.R: 2025-12-09 16:07:22.819798: constructing knn graph
> test_pipeop_isomap.R: 2025-12-09 16:07:22.828042: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-09 16:07:22.856329: Classical Scaling
> test_pipeop_isomap.R: 2025-12-09 16:07:22.873915: Isomap START
> test_pipeop_isomap.R: 2025-12-09 16:07:22.874207: constructing knn graph
> test_pipeop_isomap.R: 2025-12-09 16:07:22.882213: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-09 16:07:22.926914: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [265s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-08 16:48:22.131556: Isomap START
> test_pipeop_isomap.R: 2025-12-08 16:48:22.132692: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:22.149989: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:22.178521: Classical Scaling
> test_pipeop_isomap.R: 2025-12-08 16:48:22.253759: Isomap START
> test_pipeop_isomap.R: 2025-12-08 16:48:22.254402: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:22.265433: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:22.286387: Classical Scaling
> test_pipeop_isomap.R: 2025-12-08 16:48:22.328776: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-08 16:48:22.329903: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:22.352758: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:22.40449: embedding
> test_pipeop_isomap.R: 2025-12-08 16:48:22.406721: DONE
> test_pipeop_isomap.R: 2025-12-08 16:48:22.446992: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-08 16:48:22.44767: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:22.488391: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:22.541501: embedding
> test_pipeop_isomap.R: 2025-12-08 16:48:22.543357: DONE
> test_pipeop_isomap.R: 2025-12-08 16:48:22.675607: Isomap START
> test_pipeop_isomap.R: 2025-12-08 16:48:22.676303: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:22.695814: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:22.812078: Classical Scaling
> test_pipeop_isomap.R: 2025-12-08 16:48:22.867537: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-08 16:48:22.868545: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:22.934161: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:23.188579: embedding
> test_pipeop_isomap.R: 2025-12-08 16:48:23.194143: DONE
> test_pipeop_isomap.R: 2025-12-08 16:48:23.414131: Isomap START
> test_pipeop_isomap.R: 2025-12-08 16:48:23.414784: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:23.4254: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:23.448099: Classical Scaling
> test_pipeop_isomap.R: 2025-12-08 16:48:23.495179: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-08 16:48:23.496186: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:23.596655: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:23.650785: embedding
> test_pipeop_isomap.R: 2025-12-08 16:48:23.65256: DONE
> test_pipeop_isomap.R: 2025-12-08 16:48:23.884497: Isomap START
> test_pipeop_isomap.R: 2025-12-08 16:48:23.885129: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:23.895987: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:23.918944: Classical Scaling
> test_pipeop_isomap.R: 2025-12-08 16:48:23.988746: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-08 16:48:23.989638: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:24.014395: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:24.064008: embedding
> test_pipeop_isomap.R: 2025-12-08 16:48:24.065945: DONE
> test_pipeop_isomap.R: 2025-12-08 16:48:24.183548: Isomap START
> test_pipeop_isomap.R: 2025-12-08 16:48:24.184037: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:24.191244: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:24.207469: Classical Scaling
> test_pipeop_isomap.R: 2025-12-08 16:48:24.289423: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-08 16:48:24.290575: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:24.311283: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:24.360572: embedding
> test_pipeop_isomap.R: 2025-12-08 16:48:24.362498: DONE
> test_pipeop_isomap.R: 2025-12-08 16:48:24.472393: Isomap START
> test_pipeop_isomap.R: 2025-12-08 16:48:24.473096: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:24.481745: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:24.497991: Classical Scaling
> test_pipeop_isomap.R: 2025-12-08 16:48:24.564935: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-08 16:48:24.565833: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:24.598008: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:24.646507: embedding
> test_pipeop_isomap.R: 2025-12-08 16:48:24.647752: DONE
> test_pipeop_isomap.R: 2025-12-08 16:48:24.74044: Isomap START
> test_pipeop_isomap.R: 2025-12-08 16:48:24.740886: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:24.749412: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:24.771582: Classical Scaling
> test_pipeop_isomap.R: 2025-12-08 16:48:24.819064: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-08 16:48:24.819693: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:24.834576: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:24.884979: embedding
> test_pipeop_isomap.R: 2025-12-08 16:48:24.887043: DONE
> test_pipeop_isomap.R: 2025-12-08 16:48:25.799923: Isomap START
> test_pipeop_isomap.R: 2025-12-08 16:48:25.800654: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:25.813274: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:25.83647: Classical Scaling
> test_pipeop_isomap.R: 2025-12-08 16:48:25.960827: Isomap START
> test_pipeop_isomap.R: 2025-12-08 16:48:25.961606: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:25.973366: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:25.996246: Classical Scaling
> test_pipeop_isomap.R: 2025-12-08 16:48:26.034493: Isomap START
> test_pipeop_isomap.R: 2025-12-08 16:48:26.035251: constructing knn graph
> test_pipeop_isomap.R: 2025-12-08 16:48:26.047275: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-08 16:48:26.070344: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13