flowTraceR: Tracing Information Flow for Inter-Software Comparisons in Mass Spectrometry-Based Bottom-Up Proteomics

Useful functions to standardize software outputs from ProteomeDiscoverer, Spectronaut, DIA-NN and MaxQuant on precursor, modified peptide and proteingroup level and to trace software differences for identifications such as varying proteingroup denotations for common precursor.

Version: 0.1.0
Depends: R (≥ 2.10)
Imports: comprehenr, dplyr, ggplot2, magrittr, stringr, tibble, tidyr
Suggests: data.table, kableExtra, knitr, rmarkdown, testthat (≥ 3.0.0)
Published: 2022-06-03
DOI: 10.32614/CRAN.package.flowTraceR
Author: Oliver Kardell [aut, cre]
Maintainer: Oliver Kardell <Okdll at gmx.net>
License: MIT + file LICENSE
URL: https://github.com/OKdll/flowTraceR
NeedsCompilation: no
Materials: README NEWS
CRAN checks: flowTraceR results


Reference manual: flowTraceR.pdf
Vignettes: Example Retention Time Distribution


Package source: flowTraceR_0.1.0.tar.gz
Windows binaries: r-devel: flowTraceR_0.1.0.zip, r-release: flowTraceR_0.1.0.zip, r-oldrel: flowTraceR_0.1.0.zip
macOS binaries: r-release (arm64): flowTraceR_0.1.0.tgz, r-oldrel (arm64): flowTraceR_0.1.0.tgz, r-release (x86_64): flowTraceR_0.1.0.tgz, r-oldrel (x86_64): flowTraceR_0.1.0.tgz

Reverse dependencies:

Reverse imports: mpwR


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