bpp-phyl3
3.0.0
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#include <Bpp/App/ApplicationTools.h>
#include <Bpp/Text/KeyvalTools.h>
#include <Bpp/Numeric/Function/BfgsMultiDimensions.h>
#include <Bpp/Numeric/Function/ConjugateGradientMultiDimensions.h>
#include <Bpp/Numeric/Function/DownhillSimplexMethod.h>
#include <Bpp/Numeric/Function/Optimizer.h>
#include <Bpp/Numeric/Function/MetaOptimizer.h>
#include <Bpp/Numeric/Function/ReparametrizationFunctionWrapper.h>
#include <Bpp/Numeric/Function/SimpleMultiDimensions.h>
#include <Bpp/Numeric/Function/ThreePointsNumericalDerivative.h>
#include <Bpp/Numeric/Function/TwoPointsNumericalDerivative.h>
#include <Bpp/Numeric/ParameterList.h>
#include <Bpp/Numeric/Matrix/MatrixTools.h>
#include "Likelihood/AutonomousSubstitutionProcess.h"
#include "Io/Newick.h"
#include "OptimizationTools.h"
#include "PseudoNewtonOptimizer.h"
#include "Tree/PhyloTreeTools.h"
#include <Bpp/Seq/Io/Fasta.h>
#include <memory>