Phyl Directory Reference

Directory dependency graph for Phyl:

Directories
directory	App
directory	Distance
directory	Graphics
directory	Io
directory	Legacy
directory	Likelihood
directory	Mapping
directory	Model
directory	Parsimony
directory	Simulation
directory	Tree

Files
file	AncestralStateReconstruction.h [code]
file	OptimizationTools.cpp [code]
file	OptimizationTools.h [code]
file	PatternTools.cpp [code]
file	PatternTools.h [code]
file	PhyloStatistics.cpp [code]
file	PhyloStatistics.h [code]
file	PseudoNewtonOptimizer.cpp [code]
file	PseudoNewtonOptimizer.h [code]
file	SitePatterns.cpp [code]
file	SitePatterns.h [code]