Partial implementation of the ODAG interface. More...

#include <Bpp/Phyl/Io/IoDAG.h>

Inheritance diagram for bpp::AbstractOPhyloDAG:

Collaboration diagram for bpp::AbstractOPhyloDAG:

Public Member Functions
	AbstractOPhyloDAG ()

virtual	~AbstractOPhyloDAG ()

virtual void	writePhyloDAG (const PhyloDAG &dag, std::ostream &out) const =0
	Write a PhyloDAG to a stream. More...

virtual void	writePhyloDAG (const PhyloDAG &dag, const std::string &path, bool overwrite) const
	Write a DAG to a file. More...

virtual const std::string	getDataType () const

virtual const std::string	getFormatName () const=0

virtual const std::string	getFormatDescription () const=0

Detailed Description

Partial implementation of the ODAG interface.

Definition at line 148 of file IoDAG.h.

Constructor & Destructor Documentation

◆ AbstractOPhyloDAG()

bpp::AbstractOPhyloDAG::AbstractOPhyloDAG ( )

inline

Definition at line 152 of file IoDAG.h.

◆ ~AbstractOPhyloDAG()

virtual bpp::AbstractOPhyloDAG::~AbstractOPhyloDAG ( )

inlinevirtual

Definition at line 153 of file IoDAG.h.

Member Function Documentation

◆ getDataType()

virtual const std::string bpp::IODAG::getDataType ( ) const

inlinevirtualinherited

Implements bpp::IOFormat.

Definition at line 48 of file IoDAG.h.

◆ writePhyloDAG() [1/2]

virtual void bpp::AbstractOPhyloDAG::writePhyloDAG	(	const PhyloDAG &	dag,
		const std::string &	path,
		bool	overwrite
	)		const

inlinevirtual

Write a DAG to a file.

Parameters

dag	a PhyloDAG object.
path	The file path.
overwrite	Tell if existing file must be overwritten. Otherwise append to the file.

Exceptions

Exception If an error occurred.

Implements bpp::OPhyloDAG.

Reimplemented in bpp::ExtendedNewick.

Definition at line 157 of file IoDAG.h.

References bpp::IOException::what(), and writePhyloDAG().

◆ writePhyloDAG() [2/2]

virtual void bpp::AbstractOPhyloDAG::writePhyloDAG	(	const PhyloDAG &	dag,
		std::ostream &	out
	)		const

pure virtual

Write a PhyloDAG to a stream.