bpp::DRASDRTreeLikelihoodLeafData Class Reference

Likelihood data structure for a leaf. More...

#include <Bpp/Phyl/Legacy/Likelihood/DRASDRTreeLikelihoodData.h>

Inheritance diagram for bpp::DRASDRTreeLikelihoodLeafData:

Collaboration diagram for bpp::DRASDRTreeLikelihoodLeafData:

Public Member Functions
	DRASDRTreeLikelihoodLeafData ()
	DRASDRTreeLikelihoodLeafData (const DRASDRTreeLikelihoodLeafData &data)
DRASDRTreeLikelihoodLeafData &	operator= (const DRASDRTreeLikelihoodLeafData &data)
DRASDRTreeLikelihoodLeafData *	clone () const
const Node *	getNode () const
	Get the node associated to this data structure. More...
void	setNode (const Node *node)
	Set the node associated to this data. More...
VVdouble &	getLikelihoodArray ()

Private Attributes
VVdouble	leafLikelihood_
const Node *	leaf_

Detailed Description

Likelihood data structure for a leaf.

This class is for use with the DRASDRTreeLikelihoodData class.

Store the likelihoods arrays associated to a leaf.

See also

DRASDRTreeLikelihoodData

Definition at line 31 of file DRASDRTreeLikelihoodData.h.

Constructor & Destructor Documentation

DRASDRTreeLikelihoodLeafData() [1/2]

bpp::DRASDRTreeLikelihoodLeafData::DRASDRTreeLikelihoodLeafData ( )

inline

Definition at line 39 of file DRASDRTreeLikelihoodData.h.

Referenced by clone().

DRASDRTreeLikelihoodLeafData() [2/2]

bpp::DRASDRTreeLikelihoodLeafData::DRASDRTreeLikelihoodLeafData ( const DRASDRTreeLikelihoodLeafData &  data )

inline

Definition at line 41 of file DRASDRTreeLikelihoodData.h.

Member Function Documentation

clone()

DRASDRTreeLikelihoodLeafData* bpp::DRASDRTreeLikelihoodLeafData::clone ( ) const

inlinevirtual

Implements bpp::TreeLikelihoodNodeData.

Definition at line 51 of file DRASDRTreeLikelihoodData.h.

References DRASDRTreeLikelihoodLeafData().

getLikelihoodArray()

VVdouble& bpp::DRASDRTreeLikelihoodLeafData::getLikelihoodArray ( )

inline

Definition at line 60 of file DRASDRTreeLikelihoodData.h.

References leafLikelihood_.

Referenced by bpp::DRASDRTreeLikelihoodData::initLikelihoods().

getNode()

const Node* bpp::DRASDRTreeLikelihoodLeafData::getNode ( ) const

inlinevirtual

Get the node associated to this data structure.

Returns

The node associated to this structure.

Implements bpp::TreeLikelihoodNodeData.

Definition at line 57 of file DRASDRTreeLikelihoodData.h.

References leaf_.

operator=()

DRASDRTreeLikelihoodLeafData& bpp::DRASDRTreeLikelihoodLeafData::operator= ( const DRASDRTreeLikelihoodLeafData &  data )

inline

Definition at line 44 of file DRASDRTreeLikelihoodData.h.

References leaf_, and leafLikelihood_.

setNode()

void bpp::DRASDRTreeLikelihoodLeafData::setNode ( const Node *  node )

inlinevirtual

Set the node associated to this data.

A pointer toward this node will be created and associated to this data.

Parameters

node	The node to be associated to this data.

Implements bpp::TreeLikelihoodNodeData.

Definition at line 58 of file DRASDRTreeLikelihoodData.h.

References leaf_.

Referenced by bpp::DRASDRTreeLikelihoodData::initLikelihoods(), and bpp::DRASDRTreeLikelihoodData::reInit().

Member Data Documentation

leaf_

const Node* bpp::DRASDRTreeLikelihoodLeafData::leaf_

private

Definition at line 36 of file DRASDRTreeLikelihoodData.h.

Referenced by getNode(), operator=(), and setNode().

leafLikelihood_

VVdouble bpp::DRASDRTreeLikelihoodLeafData::leafLikelihood_

mutableprivate

Definition at line 35 of file DRASDRTreeLikelihoodData.h.

Referenced by getLikelihoodArray(), and operator=().

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The documentation for this class was generated from the following file:

• Bpp/Phyl/Legacy/Likelihood/DRASDRTreeLikelihoodData.h