DF Nodes used in the process. ProcessTree is used without any rate multiplier. More...
Collaboration diagram for bpp::LikelihoodCalculationSingleProcess::ProcessNodes:
Public Attributes | |
| std::shared_ptr< ProcessTree > | treeNode_ |
| std::shared_ptr< ConfiguredModel > | modelNode_ |
| std::shared_ptr< ConfiguredFrequencySet > | rootFreqsNode_ |
| std::shared_ptr< ConfiguredDistribution > | ratesNode_ |
Detailed Description
DF Nodes used in the process. ProcessTree is used without any rate multiplier.
Definition at line 155 of file LikelihoodCalculationSingleProcess.h.
Member Data Documentation
◆ modelNode_
| std::shared_ptr<ConfiguredModel> bpp::LikelihoodCalculationSingleProcess::ProcessNodes::modelNode_ |
Definition at line 159 of file LikelihoodCalculationSingleProcess.h.
Referenced by bpp::LikelihoodCalculationSingleProcess::getStateMap(), bpp::LikelihoodCalculationSingleProcess::makeForwardLikelihoodTree_(), bpp::LikelihoodCalculationSingleProcess::makeProcessNodes_(), bpp::LikelihoodCalculationSingleProcess::makeRootFreqs_(), and bpp::LikelihoodCalculationSingleProcess::stateMap().
◆ ratesNode_
| std::shared_ptr<ConfiguredDistribution> bpp::LikelihoodCalculationSingleProcess::ProcessNodes::ratesNode_ |
Definition at line 163 of file LikelihoodCalculationSingleProcess.h.
Referenced by bpp::LikelihoodCalculationSingleProcess::makeForwardLikelihoodTree_(), bpp::LikelihoodCalculationSingleProcess::makeLikelihoodsAtNode_(), bpp::LikelihoodCalculationSingleProcess::makeLikelihoodsAtRoot_(), bpp::LikelihoodCalculationSingleProcess::makeProcessNodes_(), and bpp::LikelihoodCalculationSingleProcess::setNumericalDerivateConfiguration().
◆ rootFreqsNode_
| std::shared_ptr<ConfiguredFrequencySet> bpp::LikelihoodCalculationSingleProcess::ProcessNodes::rootFreqsNode_ |
◆ treeNode_
| std::shared_ptr<ProcessTree> bpp::LikelihoodCalculationSingleProcess::ProcessNodes::treeNode_ |
Definition at line 158 of file LikelihoodCalculationSingleProcess.h.
Referenced by bpp::LikelihoodCalculationSingleProcess::makeForwardLikelihoodTree_(), bpp::LikelihoodCalculationSingleProcess::makeProcessNodes_(), bpp::LikelihoodCalculationSingleProcess::setClockLike(), and bpp::LikelihoodCalculationSingleProcess::setNumericalDerivateConfiguration().
The documentation for this class was generated from the following file:
- Bpp/Phyl/Likelihood/DataFlow/LikelihoodCalculationSingleProcess.h
