Here is a list of all class members with links to the classes they belong to:

- e -

• e_ : bpp::GTR
• EdgeIterator : bpp::ProbabilisticRewardMapping , bpp::ProbabilisticSubstitutionMapping
• efm_ : bpp::ExtendedFloatArrayWrapper< R, C >
• efMat_ : bpp::ExtendedFloatCol< R, C, EigenType > , bpp::ExtendedFloatNoAlias< DerivedEF > , bpp::ExtendedFloatRow< R, C, EigenType > , bpp::ExtendedFloatVectorwiseOp< DerivedEF, MatType, Direction >
• EFtmp_ : bpp::ExtendedFloatEigen< R, C, EigenType >
• Eigen::internal::nullary_wrapper : bpp::ExtendedFloat
• eigen_ : bpp::ExtendedFloatEigen< R, C, EigenType >::OwnedExtendedFloat
• eigenDecompose_ : bpp::AbstractSubstitutionModel , bpp::MarkovModulatedSubstitutionModel
• eigenValues_ : bpp::AbstractSubstitutionModel , bpp::MarkovModulatedSubstitutionModel
• eigenVWiseOp_ : bpp::ExtendedFloatVectorwiseOp< DerivedEF, MatType, Direction >
• Element() : bpp::IODAG::Element , bpp::IOTree::Element , bpp::TreeTemplateTools::Element
• elements_ : bpp::BipartitionList
• EmbeddedModel() : bpp::LG10_EX_EHO::EmbeddedModel , bpp::LGL08_CAT::EmbeddedModel , bpp::LLG08_EHO::EmbeddedModel , bpp::LLG08_EX2::EmbeddedModel , bpp::LLG08_EX3::EmbeddedModel , bpp::LLG08_UL2::EmbeddedModel , bpp::LLG08_UL3::EmbeddedModel
• emissionProbabilities_ : bpp::HmmLikelihood_DF
• emProb_ : bpp::HmmPhyloEmissionProbabilities
• enable() : bpp::TreeDrawingListener , bpp::TreeDrawingListenerAdapter
• enableContinuousRates() : bpp::NonHomogeneousSequenceSimulator , bpp::SimpleSubstitutionProcessSiteSimulator
• enabled_ : bpp::TreeDrawingListenerAdapter
• enableDerivatives() : bpp::AbstractTreeLikelihood , bpp::TreeLikelihoodInterface
• enableEigenDecomposition() : bpp::AbstractSubstitutionModel , bpp::AbstractTotallyWrappedSubstitutionModel , bpp::InMixedSubstitutionModel , bpp::MarkovModulatedSubstitutionModel , bpp::SubstitutionModelInterface
• enableExtendedBootstrapProperty() : bpp::Newick
• enableFirstOrderDerivatives() : bpp::AbstractPhyloLikelihood , bpp::AbstractTreeLikelihood , bpp::GlobalClockTreeLikelihoodFunctionWrapper
• enableListener() : bpp::TreeDrawingDisplayControler
• enableSecondOrderDerivatives() : bpp::AbstractPhyloLikelihood , bpp::AbstractTreeLikelihood , bpp::GlobalClockTreeLikelihoodFunctionWrapper
• end() : bpp::TreeIterator
• epsilon_ : bpp::RN95
• EquilibriumFrequenciesFromModel() : bpp::EquilibriumFrequenciesFromModel
• EquilibriumFrequenciesFromTransitionMatrix() : bpp::EquilibriumFrequenciesFromTransitionMatrix
• EquiprobableSubstitutionModel() : bpp::EquiprobableSubstitutionModel
• erase() : bpp::Context
• eraseNeighborArrays() : bpp::DRASDRTreeLikelihoodNodeData , bpp::DRTreeParsimonyNodeData
• estimateDistanceMatrix() : bpp::OptimizationTools
• eval() : bpp::ExtendedFloatEigen< R, C, EigenType >
• EvolutionSequenceSimulator() : bpp::EvolutionSequenceSimulator
• evolve() : bpp::AbstractMutationProcess , bpp::MutationProcess , bpp::NonHomogeneousSequenceSimulator , bpp::SimpleMutationProcess
• evolveInternal() : bpp::NonHomogeneousSequenceSimulator , bpp::SimpleSubstitutionProcessSiteSimulator
• exch_ : bpp::Coala
• exchangeability_ : bpp::AbstractSubstitutionModel , bpp::MarkovModulatedSubstitutionModel
• exchangeabilityMatrix() : bpp::AbstractSubstitutionModel , bpp::AbstractTotallyWrappedSubstitutionModel , bpp::InMixedSubstitutionModel , bpp::MarkovModulatedSubstitutionModel , bpp::SubstitutionModelInterface
• exp() : bpp::ExtendedFloat , bpp::ExtendedFloatEigen< R, C, EigenType >
• exp1_ : bpp::F81 , bpp::F84 , bpp::HKY85 , bpp::K80 , bpp::T92 , bpp::TN93
• exp21_ : bpp::HKY85 , bpp::TN93
• exp22_ : bpp::HKY85 , bpp::TN93
• exp2_ : bpp::F84 , bpp::K80 , bpp::T92
• exp_ : bpp::BinarySubstitutionModel , bpp::EquiprobableSubstitutionModel , bpp::ExtendedFloat , bpp::ExtendedFloatEigen< R, C, EigenType > , bpp::JCnuc , bpp::JCprot , bpp::RE08 , bpp::TwoParameterBinarySubstitutionModel
• expandMatrix() : bpp::LikelihoodCalculationOnABranch , bpp::LikelihoodCalculationSingleProcess
• expandVector() : bpp::LikelihoodCalculationOnABranch , bpp::LikelihoodCalculationSingleProcess
• exponent_ : bpp::CWiseConstantPow< T >
• exponent_part() : bpp::CWiseCompound< R, ReductionOf< T > >::compound_functor , bpp::CWiseMatching< R, ReductionOf< T > >::matching_functor , bpp::CWisePattern< R >::pattern_functor , bpp::ExtendedFloat , bpp::ExtendedFloatArrayWrapper< R, C > , bpp::ExtendedFloatCol< R, C, EigenType > , bpp::ExtendedFloatEigen< R, C, EigenType > , bpp::ExtendedFloatEigen< R, C, EigenType >::OwnedExtendedFloat , bpp::ExtendedFloatRow< R, C, EigenType >
• ExponentialDiscreteRateDistribution() : bpp::ExponentialDiscreteRateDistribution
• ExtendedFloat() : bpp::ExtendedFloat
• ExtendedFloatArray : bpp::ExtendedFloatEigen< R, C, EigenType >
• ExtendedFloatArrayWrapper() : bpp::ExtendedFloatArrayWrapper< R, C >
• ExtendedFloatCol() : bpp::ExtendedFloatCol< R, C, EigenType >
• ExtendedFloatEigen() : bpp::ExtendedFloatEigen< R, C, EigenType > , bpp::ExtendedFloatEigen< R, C, EigenType >::OwnedExtendedFloat
• ExtendedFloatEigenBase() : bpp::ExtendedFloatEigenBase< Derived >
• ExtendedFloatMatrix : bpp::ExtendedFloatEigen< R, C, EigenType >
• ExtendedFloatNoAlias() : bpp::ExtendedFloatNoAlias< DerivedEF >
• ExtendedFloatRow() : bpp::ExtendedFloatRow< R, C, EigenType >
• ExtendedFloatVectorwiseOp() : bpp::ExtendedFloatVectorwiseOp< DerivedEF, MatType, Direction >
• ExtendedNewick() : bpp::ExtendedNewick
• ExtType : bpp::ExtendedFloat , bpp::ExtendedFloatArrayWrapper< R, C > , bpp::ExtendedFloatCol< R, C, EigenType > , bpp::ExtendedFloatEigen< R, C, EigenType > , bpp::ExtendedFloatRow< R, C, EigenType >