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• L95() : bpp::L95
• LabelCollapsedNodesTreeDrawingListener() : bpp::LabelCollapsedNodesTreeDrawingListener
• LabelInnerNodesTreeDrawingListener() : bpp::LabelInnerNodesTreeDrawingListener
• LabelSubstitutionCount() : bpp::LabelSubstitutionCount
• LaplaceSubstitutionCount() : bpp::LaplaceSubstitutionCount
• layerModel() : bpp::CodonAdHocSubstitutionModel
• leafData() : bpp::DRTreeParsimonyData
• LeafNamesTreeDrawingListener() : bpp::LeafNamesTreeDrawingListener
• LegacyAbstractMapping() : bpp::LegacyAbstractMapping
• LegacyAbstractRewardMapping() : bpp::LegacyAbstractRewardMapping
• LegacyAbstractSubstitutionMapping() : bpp::LegacyAbstractSubstitutionMapping
• LegacyAncestralStateReconstruction() : bpp::LegacyAncestralStateReconstruction
• LegacyMappingInterface() : bpp::LegacyMappingInterface
• LegacyMarginalAncestralStateReconstruction() : bpp::LegacyMarginalAncestralStateReconstruction
• LegacyOptimizationTools() : bpp::LegacyOptimizationTools
• LegacyPhylogeneticsApplicationTools() : bpp::LegacyPhylogeneticsApplicationTools
• LegacyProbabilisticRewardMapping() : bpp::LegacyProbabilisticRewardMapping
• LegacyProbabilisticSubstitutionMapping() : bpp::LegacyProbabilisticSubstitutionMapping
• LegacyRewardMappingInterface() : bpp::LegacyRewardMappingInterface
• LegacyRewardMappingTools() : bpp::LegacyRewardMappingTools
• LegacySubstitutionMappingInterface() : bpp::LegacySubstitutionMappingInterface
• LegacySubstitutionMappingTools() : bpp::LegacySubstitutionMappingTools
• lessEigen() : bpp::MultinomialFromTransitionModel
• LG08() : bpp::LG08
• LG10_EX_EHO() : bpp::LG10_EX_EHO
• LGL08_CAT() : bpp::LGL08_CAT
• Lik_t() : bpp::AbstractLkTransitionModel , bpp::BranchModelInterface , bpp::MultinomialFromTransitionModel , bpp::TransitionFromTransitionModel , bpp::TransitionModelInterface
• likelihoodCalculation() : bpp::AlignedPhyloLikelihoodAutoCorrelation , bpp::AlignedPhyloLikelihoodHmm , bpp::AlignedPhyloLikelihoodMixture , bpp::AlignedPhyloLikelihoodProduct , bpp::AutoCorrelationProcessPhyloLikelihood , bpp::HmmProcessPhyloLikelihood
• LikelihoodCalculation() : bpp::LikelihoodCalculation
• likelihoodCalculation() : bpp::MixtureProcessPhyloLikelihood , bpp::OnABranchPhyloLikelihood , bpp::OneProcessSequencePhyloLikelihood , bpp::PartitionProcessPhyloLikelihood , bpp::PhyloLikelihoodFormula , bpp::PhyloLikelihoodInterface , bpp::SingleProcessPhyloLikelihood
• LikelihoodCalculationOnABranch() : bpp::LikelihoodCalculationOnABranch
• likelihoodCalculationOnABranch() : bpp::OnABranchPhyloLikelihood
• LikelihoodCalculationSingleProcess() : bpp::LikelihoodCalculationSingleProcess
• likelihoodCalculationSingleProcess() : bpp::OneProcessSequencePhyloLikelihood , bpp::SingleProcessPhyloLikelihood
• likelihoodData() : bpp::DRHomogeneousTreeLikelihood , bpp::DRNonHomogeneousTreeLikelihood , bpp::DRTreeLikelihoodInterface , bpp::RHomogeneousTreeLikelihood , bpp::RNonHomogeneousTreeLikelihood , bpp::TreeLikelihoodInterface
• listenerModifiesParameters() : bpp::NaNListener
• listModelNames() : bpp::NonHomogeneousSubstitutionProcess , bpp::SubstitutionModelSet
• LLG08_EHO() : bpp::LLG08_EHO
• LLG08_EX2() : bpp::LLG08_EX2
• LLG08_EX3() : bpp::LLG08_EX3
• LLG08_UL2() : bpp::LLG08_UL2
• LLG08_UL3() : bpp::LLG08_UL3
• log() : bpp::ExtendedFloat , bpp::ExtendedFloatEigen< R, C, EigenType >
• LogSumExp() : bpp::LogSumExp< R, T0, T1 >
• lround() : bpp::ExtendedFloat