- l -
- L95() : bpp::L95
- LabelCollapsedNodesTreeDrawingListener() : bpp::LabelCollapsedNodesTreeDrawingListener
- LabelInnerNodesTreeDrawingListener() : bpp::LabelInnerNodesTreeDrawingListener
- LabelSubstitutionCount() : bpp::LabelSubstitutionCount
- LaplaceSubstitutionCount() : bpp::LaplaceSubstitutionCount
- layerModel() : bpp::CodonAdHocSubstitutionModel
- leafData() : bpp::DRTreeParsimonyData
- LeafNamesTreeDrawingListener() : bpp::LeafNamesTreeDrawingListener
- LegacyAbstractMapping() : bpp::LegacyAbstractMapping
- LegacyAbstractRewardMapping() : bpp::LegacyAbstractRewardMapping
- LegacyAbstractSubstitutionMapping() : bpp::LegacyAbstractSubstitutionMapping
- LegacyAncestralStateReconstruction() : bpp::LegacyAncestralStateReconstruction
- LegacyMappingInterface() : bpp::LegacyMappingInterface
- LegacyMarginalAncestralStateReconstruction() : bpp::LegacyMarginalAncestralStateReconstruction
- LegacyOptimizationTools() : bpp::LegacyOptimizationTools
- LegacyPhylogeneticsApplicationTools() : bpp::LegacyPhylogeneticsApplicationTools
- LegacyProbabilisticRewardMapping() : bpp::LegacyProbabilisticRewardMapping
- LegacyProbabilisticSubstitutionMapping() : bpp::LegacyProbabilisticSubstitutionMapping
- LegacyRewardMappingInterface() : bpp::LegacyRewardMappingInterface
- LegacyRewardMappingTools() : bpp::LegacyRewardMappingTools
- LegacySubstitutionMappingInterface() : bpp::LegacySubstitutionMappingInterface
- LegacySubstitutionMappingTools() : bpp::LegacySubstitutionMappingTools
- lessEigen() : bpp::MultinomialFromTransitionModel
- LG08() : bpp::LG08
- LG10_EX_EHO() : bpp::LG10_EX_EHO
- LGL08_CAT() : bpp::LGL08_CAT
- Lik_t() : bpp::AbstractLkTransitionModel, bpp::BranchModelInterface, bpp::MultinomialFromTransitionModel, bpp::TransitionFromTransitionModel, bpp::TransitionModelInterface
- likelihoodCalculation() : bpp::AlignedPhyloLikelihoodAutoCorrelation, bpp::AlignedPhyloLikelihoodHmm, bpp::AlignedPhyloLikelihoodMixture, bpp::AlignedPhyloLikelihoodProduct, bpp::AutoCorrelationProcessPhyloLikelihood, bpp::HmmProcessPhyloLikelihood
- LikelihoodCalculation() : bpp::LikelihoodCalculation
- likelihoodCalculation() : bpp::MixtureProcessPhyloLikelihood, bpp::OnABranchPhyloLikelihood, bpp::OneProcessSequencePhyloLikelihood, bpp::PartitionProcessPhyloLikelihood, bpp::PhyloLikelihoodFormula, bpp::PhyloLikelihoodInterface, bpp::SingleProcessPhyloLikelihood
- LikelihoodCalculationOnABranch() : bpp::LikelihoodCalculationOnABranch
- likelihoodCalculationOnABranch() : bpp::OnABranchPhyloLikelihood
- LikelihoodCalculationSingleProcess() : bpp::LikelihoodCalculationSingleProcess
- likelihoodCalculationSingleProcess() : bpp::OneProcessSequencePhyloLikelihood, bpp::SingleProcessPhyloLikelihood
- likelihoodData() : bpp::DRHomogeneousTreeLikelihood, bpp::DRNonHomogeneousTreeLikelihood, bpp::DRTreeLikelihoodInterface, bpp::RHomogeneousTreeLikelihood, bpp::RNonHomogeneousTreeLikelihood, bpp::TreeLikelihoodInterface
- listenerModifiesParameters() : bpp::NaNListener
- listModelNames() : bpp::NonHomogeneousSubstitutionProcess, bpp::SubstitutionModelSet
- LLG08_EHO() : bpp::LLG08_EHO
- LLG08_EX2() : bpp::LLG08_EX2
- LLG08_EX3() : bpp::LLG08_EX3
- LLG08_UL2() : bpp::LLG08_UL2
- LLG08_UL3() : bpp::LLG08_UL3
- log() : bpp::ExtendedFloat, bpp::ExtendedFloatEigen< R, C, EigenType >
- LogSumExp() : bpp::LogSumExp< R, T0, T1 >
- lround() : bpp::ExtendedFloat