- n -

• NaiveSubstitutionCount() : bpp::NaiveSubstitutionCount
• NaNListener() : bpp::NaNListener
• nbDependencies() : bpp::Node_DF
• nbDependentNodes() : bpp::Node_DF
• NeighborJoining() : bpp::NeighborJoining
• nestedModel() : bpp::gBGC , bpp::MarkovModulatedSubstitutionModel , bpp::RE08 , bpp::RE08Codon , bpp::RE08Nucleotide , bpp::RE08Protein , bpp::YpR
• nestedModel_() : bpp::RE08
• Newick() : bpp::Newick
• newOutGroup() : bpp::Tree , bpp::TreeTemplate< N >
• next() : bpp::AbstractHomogeneousTreeLikelihood::ConstHomogeneousSiteModelIterator , bpp::AbstractNonHomogeneousTreeLikelihood::ConstNonHomogeneousSiteModelIterator , bpp::AbstractTreeLikelihood::ConstNoPartitionBranchModelIterator , bpp::AbstractTreeLikelihood::SimpleBranchIterator , bpp::AbstractTreeLikelihood::SimpleSiteIterator , bpp::InOrderTreeIterator , bpp::PostOrderTreeIterator , bpp::PreOrderTreeIterator , bpp::TreeIterator , bpp::TreeLikelihoodInterface::BranchIterator , bpp::TreeLikelihoodInterface::ConstBranchModelIterator , bpp::TreeLikelihoodInterface::ConstSiteModelIterator , bpp::TreeLikelihoodInterface::SiteIterator
• NexusIOTree() : bpp::NexusIOTree
• Nhx() : bpp::Nhx
• nModel() : bpp::AbstractBiblioMixedTransitionModel , bpp::AbstractMixedTransitionModel , bpp::AbstractWordSubstitutionModel , bpp::MixedTransitionModelInterface
• nModel_() : bpp::AbstractBiblioMixedTransitionModel , bpp::AbstractMixedTransitionModel , bpp::MixedTransitionModelInterface
• NNIHomogeneousTreeLikelihood() : bpp::NNIHomogeneousTreeLikelihood
• NNISearchable() : bpp::NNISearchable
• NNITopologyListener() : bpp::NNITopologyListener
• NNITopologyListener2() : bpp::NNITopologyListener2
• NNITopologySearch() : bpp::NNITopologySearch
• noalias() : bpp::ExtendedFloatEigenBase< Derived >
• Node() : bpp::MixedSubstitutionModelSet::HyperNode::Node , bpp::Node
• Node_DF() : bpp::Node_DF
• nodeData() : bpp::DRTreeParsimonyData , bpp::TreeParsimonyDataInterface
• NodeEvent() : bpp::NodeEvent
• NodeException() : bpp::NodeException
• NodeNotFoundException() : bpp::NodeNotFoundException
• NodePException() : bpp::NodePException
• NodesIdTreeDrawingListener() : bpp::NodesIdTreeDrawingListener
• NodeTemplate() : bpp::NodeTemplate< NodeInfos >
• nodeToParenthesis() : bpp::ExtendedNewick , bpp::Newick , bpp::Nhx , bpp::TreeTemplateTools , bpp::TreeTools
• NonHomogeneousSequenceSimulator() : bpp::NonHomogeneousSequenceSimulator
• NonHomogeneousSubstitutionProcess() : bpp::NonHomogeneousSubstitutionProcess
• normalizations() : bpp::AbstractSinglePhyloSubstitutionMapping , bpp::PhyloSubstitutionMapping
• normalizationsPerformed() : bpp::AbstractSinglePhyloSubstitutionMapping , bpp::PhyloSubstitutionMapping
• normalize() : bpp::AbstractFrequencySet , bpp::AbstractSubstitutionModel , bpp::AbstractTotallyWrappedSubstitutionModel , bpp::ExtendedFloat , bpp::ExtendedFloatEigen< R, C, EigenType > , bpp::InMixedSubstitutionModel , bpp::MarkovModulatedSubstitutionModel , bpp::SubstitutionModelInterface
• normalize_big() : bpp::ExtendedFloat , bpp::ExtendedFloatEigen< R, C, EigenType >
• normalize_small() : bpp::ExtendedFloat , bpp::ExtendedFloatEigen< R, C, EigenType >
• normalizeVRates() : bpp::AbstractBiblioMixedTransitionModel , bpp::AbstractMixedTransitionModel , bpp::MixedTransitionModelInterface
• notifyAllPerformed() : bpp::NNITopologySearch
• notifyAllSuccessful() : bpp::NNITopologySearch
• notifyAllTested() : bpp::NNITopologySearch
• NullaryExpr() : bpp::ExtendedFloatEigen< R, C, EigenType >
• NumericConstant() : bpp::NumericConstant< T >
• NumericMutable() : bpp::NumericMutable< T >