- n -
- NaiveSubstitutionCount() : bpp::NaiveSubstitutionCount
- NaNListener() : bpp::NaNListener
- nbDependencies() : bpp::Node_DF
- nbDependentNodes() : bpp::Node_DF
- NeighborJoining() : bpp::NeighborJoining
- nestedModel() : bpp::gBGC, bpp::MarkovModulatedSubstitutionModel, bpp::RE08, bpp::RE08Codon, bpp::RE08Nucleotide, bpp::RE08Protein, bpp::YpR
- nestedModel_() : bpp::RE08
- Newick() : bpp::Newick
- newOutGroup() : bpp::Tree, bpp::TreeTemplate< N >
- next() : bpp::AbstractHomogeneousTreeLikelihood::ConstHomogeneousSiteModelIterator, bpp::AbstractNonHomogeneousTreeLikelihood::ConstNonHomogeneousSiteModelIterator, bpp::AbstractTreeLikelihood::ConstNoPartitionBranchModelIterator, bpp::AbstractTreeLikelihood::SimpleBranchIterator, bpp::AbstractTreeLikelihood::SimpleSiteIterator, bpp::InOrderTreeIterator, bpp::PostOrderTreeIterator, bpp::PreOrderTreeIterator, bpp::TreeIterator, bpp::TreeLikelihoodInterface::BranchIterator, bpp::TreeLikelihoodInterface::ConstBranchModelIterator, bpp::TreeLikelihoodInterface::ConstSiteModelIterator, bpp::TreeLikelihoodInterface::SiteIterator
- NexusIOTree() : bpp::NexusIOTree
- Nhx() : bpp::Nhx
- nModel() : bpp::AbstractBiblioMixedTransitionModel, bpp::AbstractMixedTransitionModel, bpp::AbstractWordSubstitutionModel, bpp::MixedTransitionModelInterface
- nModel_() : bpp::AbstractBiblioMixedTransitionModel, bpp::AbstractMixedTransitionModel, bpp::MixedTransitionModelInterface
- NNIHomogeneousTreeLikelihood() : bpp::NNIHomogeneousTreeLikelihood
- NNISearchable() : bpp::NNISearchable
- NNITopologyListener() : bpp::NNITopologyListener
- NNITopologyListener2() : bpp::NNITopologyListener2
- NNITopologySearch() : bpp::NNITopologySearch
- noalias() : bpp::ExtendedFloatEigenBase< Derived >
- Node() : bpp::MixedSubstitutionModelSet::HyperNode::Node, bpp::Node
- Node_DF() : bpp::Node_DF
- nodeData() : bpp::DRTreeParsimonyData, bpp::TreeParsimonyDataInterface
- NodeEvent() : bpp::NodeEvent
- NodeException() : bpp::NodeException
- NodeNotFoundException() : bpp::NodeNotFoundException
- NodePException() : bpp::NodePException
- NodesIdTreeDrawingListener() : bpp::NodesIdTreeDrawingListener
- NodeTemplate() : bpp::NodeTemplate< NodeInfos >
- nodeToParenthesis() : bpp::Newick, bpp::Nhx, bpp::TreeTemplateTools, bpp::TreeTools
- NonHomogeneousSequenceSimulator() : bpp::NonHomogeneousSequenceSimulator
- NonHomogeneousSubstitutionProcess() : bpp::NonHomogeneousSubstitutionProcess
- normalizations() : bpp::AbstractSinglePhyloSubstitutionMapping, bpp::PhyloSubstitutionMapping
- normalizationsPerformed() : bpp::AbstractSinglePhyloSubstitutionMapping, bpp::PhyloSubstitutionMapping
- normalize() : bpp::AbstractFrequencySet, bpp::AbstractSubstitutionModel, bpp::AbstractTotallyWrappedSubstitutionModel, bpp::ExtendedFloat, bpp::ExtendedFloatEigen< R, C, EigenType >, bpp::InMixedSubstitutionModel, bpp::MarkovModulatedSubstitutionModel, bpp::SubstitutionModelInterface
- normalize_big() : bpp::ExtendedFloat, bpp::ExtendedFloatEigen< R, C, EigenType >
- normalize_small() : bpp::ExtendedFloat, bpp::ExtendedFloatEigen< R, C, EigenType >
- normalizeVRates() : bpp::AbstractBiblioMixedTransitionModel, bpp::AbstractMixedTransitionModel, bpp::MixedTransitionModelInterface
- notifyAllPerformed() : bpp::NNITopologySearch
- notifyAllSuccessful() : bpp::NNITopologySearch
- notifyAllTested() : bpp::NNITopologySearch
- NullaryExpr() : bpp::ExtendedFloatEigen< R, C, EigenType >
- NumericConstant() : bpp::NumericConstant< T >
- NumericMutable() : bpp::NumericMutable< T >