bpp-phyl3
3.0.0
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- n -
NaiveSubstitutionCount() :
bpp::NaiveSubstitutionCount
NaNListener() :
bpp::NaNListener
nbDependencies() :
bpp::Node_DF
nbDependentNodes() :
bpp::Node_DF
NeighborJoining() :
bpp::NeighborJoining
nestedModel() :
bpp::gBGC
,
bpp::MarkovModulatedSubstitutionModel
,
bpp::RE08
,
bpp::RE08Codon
,
bpp::RE08Nucleotide
,
bpp::RE08Protein
,
bpp::YpR
nestedModel_() :
bpp::RE08
Newick() :
bpp::Newick
newOutGroup() :
bpp::Tree
,
bpp::TreeTemplate< N >
next() :
bpp::AbstractHomogeneousTreeLikelihood::ConstHomogeneousSiteModelIterator
,
bpp::AbstractNonHomogeneousTreeLikelihood::ConstNonHomogeneousSiteModelIterator
,
bpp::AbstractTreeLikelihood::ConstNoPartitionBranchModelIterator
,
bpp::AbstractTreeLikelihood::SimpleBranchIterator
,
bpp::AbstractTreeLikelihood::SimpleSiteIterator
,
bpp::InOrderTreeIterator
,
bpp::PostOrderTreeIterator
,
bpp::PreOrderTreeIterator
,
bpp::TreeIterator
,
bpp::TreeLikelihoodInterface::BranchIterator
,
bpp::TreeLikelihoodInterface::ConstBranchModelIterator
,
bpp::TreeLikelihoodInterface::ConstSiteModelIterator
,
bpp::TreeLikelihoodInterface::SiteIterator
NexusIOTree() :
bpp::NexusIOTree
Nhx() :
bpp::Nhx
nModel() :
bpp::AbstractBiblioMixedTransitionModel
,
bpp::AbstractMixedTransitionModel
,
bpp::AbstractWordSubstitutionModel
,
bpp::MixedTransitionModelInterface
nModel_() :
bpp::AbstractBiblioMixedTransitionModel
,
bpp::AbstractMixedTransitionModel
,
bpp::MixedTransitionModelInterface
NNIHomogeneousTreeLikelihood() :
bpp::NNIHomogeneousTreeLikelihood
NNISearchable() :
bpp::NNISearchable
NNITopologyListener() :
bpp::NNITopologyListener
NNITopologyListener2() :
bpp::NNITopologyListener2
NNITopologySearch() :
bpp::NNITopologySearch
noalias() :
bpp::ExtendedFloatEigenBase< Derived >
Node() :
bpp::MixedSubstitutionModelSet::HyperNode::Node
,
bpp::Node
Node_DF() :
bpp::Node_DF
nodeData() :
bpp::DRTreeParsimonyData
,
bpp::TreeParsimonyDataInterface
NodeEvent() :
bpp::NodeEvent
NodeException() :
bpp::NodeException
NodeNotFoundException() :
bpp::NodeNotFoundException
NodePException() :
bpp::NodePException
NodesIdTreeDrawingListener() :
bpp::NodesIdTreeDrawingListener
NodeTemplate() :
bpp::NodeTemplate< NodeInfos >
nodeToParenthesis() :
bpp::Newick
,
bpp::Nhx
,
bpp::TreeTemplateTools
,
bpp::TreeTools
NonHomogeneousSequenceSimulator() :
bpp::NonHomogeneousSequenceSimulator
NonHomogeneousSubstitutionProcess() :
bpp::NonHomogeneousSubstitutionProcess
normalizations() :
bpp::AbstractSinglePhyloSubstitutionMapping
,
bpp::PhyloSubstitutionMapping
normalizationsPerformed() :
bpp::AbstractSinglePhyloSubstitutionMapping
,
bpp::PhyloSubstitutionMapping
normalize() :
bpp::AbstractFrequencySet
,
bpp::AbstractSubstitutionModel
,
bpp::AbstractTotallyWrappedSubstitutionModel
,
bpp::ExtendedFloat
,
bpp::ExtendedFloatEigen< R, C, EigenType >
,
bpp::InMixedSubstitutionModel
,
bpp::MarkovModulatedSubstitutionModel
,
bpp::SubstitutionModelInterface
normalize_big() :
bpp::ExtendedFloat
,
bpp::ExtendedFloatEigen< R, C, EigenType >
normalize_small() :
bpp::ExtendedFloat
,
bpp::ExtendedFloatEigen< R, C, EigenType >
normalizeVRates() :
bpp::AbstractBiblioMixedTransitionModel
,
bpp::AbstractMixedTransitionModel
,
bpp::MixedTransitionModelInterface
notifyAllPerformed() :
bpp::NNITopologySearch
notifyAllSuccessful() :
bpp::NNITopologySearch
notifyAllTested() :
bpp::NNITopologySearch
NullaryExpr() :
bpp::ExtendedFloatEigen< R, C, EigenType >
NumericConstant() :
bpp::NumericConstant< T >
NumericMutable() :
bpp::NumericMutable< T >
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