#include <Bpp/Phyl/Legacy/Model/MixedSubstitutionModelSet.h>
Collaboration diagram for bpp::MixedSubstitutionModelSet::HyperNode::Node:
Public Member Functions | |
| Node () | |
| Node (const Node &n) | |
| Node & | operator= (const Node &n) |
| virtual | ~Node () |
| Node & | operator= (const Vuint &n) |
| void | insertN (const Vuint &vn) |
| size_t | size () const |
| Node & | operator+= (const Node &) |
| Cumulates the elements of the given Node into this one. More... | |
| bool | operator<= (const Node &) const |
| checks if this Node is included in another one. More... | |
| bool | operator>= (const Node &) const |
| checks if this HyperNode includes another one. More... | |
| bool | intersects (const Node &) const |
| checks if this Node intersects another one. More... | |
| uint | operator[] (size_t i) const |
Private Attributes | |
| Vuint | vNumb_ |
| A vector<int> where all elements are different and in increasing order. More... | |
Detailed Description
Definition at line 93 of file MixedSubstitutionModelSet.h.
Constructor & Destructor Documentation
◆ Node() [1/2]
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inline |
Definition at line 102 of file MixedSubstitutionModelSet.h.
◆ Node() [2/2]
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inline |
Definition at line 103 of file MixedSubstitutionModelSet.h.
◆ ~Node()
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inlinevirtual |
Definition at line 110 of file MixedSubstitutionModelSet.h.
Member Function Documentation
◆ insertN()
| void MixedSubstitutionModelSet::HyperNode::Node::insertN | ( | const Vuint & | vn | ) |
Definition at line 387 of file MixedSubstitutionModelSet.cpp.
◆ intersects()
| bool MixedSubstitutionModelSet::HyperNode::Node::intersects | ( | const Node & | n | ) | const |
checks if this Node intersects another one.
Definition at line 432 of file MixedSubstitutionModelSet.cpp.
References vNumb_.
◆ operator+=()
| MixedSubstitutionModelSet::HyperNode::Node & MixedSubstitutionModelSet::HyperNode::Node::operator+= | ( | const Node & | n | ) |
Cumulates the elements of the given Node into this one.
Definition at line 406 of file MixedSubstitutionModelSet.cpp.
References vNumb_.
◆ operator<=()
| bool MixedSubstitutionModelSet::HyperNode::Node::operator<= | ( | const Node & | n | ) | const |
checks if this Node is included in another one.
Definition at line 413 of file MixedSubstitutionModelSet.cpp.
References vNumb_.
◆ operator=() [1/2]
Definition at line 104 of file MixedSubstitutionModelSet.h.
References vNumb_.
◆ operator=() [2/2]
Definition at line 112 of file MixedSubstitutionModelSet.h.
References vNumb_.
◆ operator>=()
| bool MixedSubstitutionModelSet::HyperNode::Node::operator>= | ( | const Node & | n | ) | const |
checks if this HyperNode includes another one.
Definition at line 427 of file MixedSubstitutionModelSet.cpp.
◆ operator[]()
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inline |
Definition at line 145 of file MixedSubstitutionModelSet.h.
References vNumb_.
◆ size()
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inline |
Definition at line 120 of file MixedSubstitutionModelSet.h.
References vNumb_.
Referenced by bpp::MixedSubstitutionModelSet::complete(), bpp::MixedSubstitutionModelSet::computeHyperNodesProbabilities(), bpp::RNonHomogeneousMixedTreeLikelihood::computeTransitionProbabilitiesForNode(), bpp::MixedSubstitutionModelSet::getHyperNodeProbability(), and bpp::RNonHomogeneousMixedTreeLikelihood::init().
Member Data Documentation
◆ vNumb_
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private |
A vector<int> where all elements are different and in increasing order.
Definition at line 99 of file MixedSubstitutionModelSet.h.
Referenced by intersects(), operator+=(), operator<=(), operator=(), operator[](), and size().
The documentation for this class was generated from the following files:
- Bpp/Phyl/Legacy/Model/MixedSubstitutionModelSet.h
- Bpp/Phyl/Legacy/Model/MixedSubstitutionModelSet.cpp
